LOCUS CCD66908.1 1294 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Alpha,alpha-trehalose-phosphate
synthase [UDP-forming] 1 protein.
ACCESSION BX284606-4080
PROTEIN_ID CCD66908.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="tps-1"
/locus_tag="CELE_ZK54.2"
/standard_name="ZK54.2b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00006602"
/db_xref="EnsemblGenomes-Tr:ZK54.2a.1"
/db_xref="EnsemblGenomes-Tr:ZK54.2a.2"
/db_xref="EnsemblGenomes-Tr:ZK54.2a.3"
/db_xref="WormBase:WBGene00006602"
intron_pos 20:0 (1/19)
intron_pos 133:0 (2/19)
intron_pos 164:0 (3/19)
intron_pos 238:0 (4/19)
intron_pos 287:0 (5/19)
intron_pos 347:0 (6/19)
intron_pos 389:2 (7/19)
intron_pos 416:0 (8/19)
intron_pos 450:0 (9/19)
intron_pos 502:0 (10/19)
intron_pos 576:0 (11/19)
intron_pos 613:0 (12/19)
intron_pos 840:0 (13/19)
intron_pos 883:0 (14/19)
intron_pos 946:0 (15/19)
intron_pos 982:2 (16/19)
intron_pos 1079:0 (17/19)
intron_pos 1157:0 (18/19)
intron_pos 1225:0 (19/19)
BEGIN
1 MDPFDRPKND NDPFEDALKR CHKILEKLDC PFVTGKEKDL DESDDMTENE DHDEMANEDD
61 GIPSNEKKVE TRKMDCTSGQ LLAPKLPEKA ESISSASESS EDSESVAILK YTVRTCYAIW
121 KKRQKNSEIA LKGLMIVLEL CLSQPSARDD AFSALLETLG YNTVTFWKAV VPQIYNSDLS
181 YATQYREALL FSLVLYDVNH SKNRLRELYA AVPGVRQSML GIRAKQFGER YRHLQMKIAR
241 SRASSRMSSK MGSEENLPAM ASMMNDVVFD EEPHTQSPLV DMSHDKQRVI NVSNAPPVSI
301 SRKTSGSWEI KQGSGGLVAC VDPVMSADKK NIWLSNLGVN MQEELKEHST STNSLGLPLI
361 KQACAGEVFC VLERNEKKEE LTPKQQAVES DMSLLSVLNT YNKHSYQLNP VVVNQDDYNT
421 YYGGISNGLL WPALHNLPQY ISPCFDDPEL LREQWCAYVR VNYLFAINAA RNSRAQDFIW
481 IHDYHLMLCG QIMRSLESSL DIGFFIHIPF QPPANFMTKY KTVADPIMRA LLRFTKVGFQ
541 TSRDRDTFVK LVAKHIKRTK IEYDSRLDRY TIEHDGWTCS LGVFPVSIKI ADFVNIAKNP
601 QTIIEAEEIK KQIMGRSADG GQLFFSVERF DYTKGISEKL RAWQRYFEKY PDRIGKDVLF
661 QVAVTNRRSV DSYRQYQDDV LAVADLINQK FKSEDYPEWK PVIFETDGLP RTRLIAHYLA
721 MDIGVVTPSK DGMNLVAKEM LVCNPTASLV LSTGAGTEVQ LSNAQFYSEQ EGKCYHRVEE
781 ISNTEAFADN FFAAATESKE TRTKHGEKIN QFLCVHDIDE WSDQFLDPKW THEVISQCEV
841 KQLGQFYGLM SRTAQVRRQI VECVLKGLPI RPHFRYSLEN AKNSLESSCK SGTKLSLEAD
901 EESGEEKGFE ITYDIHDELS EMEKDLAFLA FIQSDEYENA EEFIKTLGSF YEGGPVLFKN
961 EVKQAAEMLQ QGIHYNTFFT DRDGTLKSYA CSYPTSVQPA YSAVIQAQFA RRCATFCAIV
1021 TTAPLLHTGI LEVATIPEGY YAYGASAGRE WYLNPAQQFK DRSFSAIDLN LMNKVFDIIE
1081 ELLERPEFRI FKWIGSGIQK HCGHITIAKQ DVNGTIPSRK VIRLYEQLVK IVNDFDPNGT
1141 TLTMRESDLD FKIYVKAKLK GRIFNKGHGI RLVRERLKPN MSKGNCLVCG DNESDIPMLE
1201 ECLKLAGSKV YTIWVTADTN LQEKVTQLCD RFSCSNIHFV SCPQVLLGAM AYATAHTLVD
1261 ERNRKLDYYY DSDTPMDQEE SSTLGASLGT SFGN
//