LOCUS CCD66907.1 1331 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Alpha,alpha-trehalose-phosphate
synthase [UDP-forming] 1 protein.
ACCESSION BX284606-4079
PROTEIN_ID CCD66907.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="tps-1"
/locus_tag="CELE_ZK54.2"
/standard_name="ZK54.2a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00006602"
/db_xref="WormBase:WBGene00006602"
intron_pos 32:0 (1/20)
intron_pos 57:0 (2/20)
intron_pos 170:0 (3/20)
intron_pos 201:0 (4/20)
intron_pos 275:0 (5/20)
intron_pos 324:0 (6/20)
intron_pos 384:0 (7/20)
intron_pos 426:2 (8/20)
intron_pos 453:0 (9/20)
intron_pos 487:0 (10/20)
intron_pos 539:0 (11/20)
intron_pos 613:0 (12/20)
intron_pos 650:0 (13/20)
intron_pos 877:0 (14/20)
intron_pos 920:0 (15/20)
intron_pos 983:0 (16/20)
intron_pos 1019:2 (17/20)
intron_pos 1116:0 (18/20)
intron_pos 1194:0 (19/20)
intron_pos 1262:0 (20/20)
BEGIN
1 MTDTATGVHS NANGVEKVPT PVFSIEGEPT QETAPTRMDP FDRPKNDNDP FEDALKRCHK
61 ILEKLDCPFV TGKEKDLDES DDMTENEDHD EMANEDDGIP SNEKKVETRK MDCTSGQLLA
121 PKLPEKAESI SSASESSEDS ESVAILKYTV RTCYAIWKKR QKNSEIALKG LMIVLELCLS
181 QPSARDDAFS ALLETLGYNT VTFWKAVVPQ IYNSDLSYAT QYREALLFSL VLYDVNHSKN
241 RLRELYAAVP GVRQSMLGIR AKQFGERYRH LQMKIARSRA SSRMSSKMGS EENLPAMASM
301 MNDVVFDEEP HTQSPLVDMS HDKQRVINVS NAPPVSISRK TSGSWEIKQG SGGLVACVDP
361 VMSADKKNIW LSNLGVNMQE ELKEHSTSTN SLGLPLIKQA CAGEVFCVLE RNEKKEELTP
421 KQQAVESDMS LLSVLNTYNK HSYQLNPVVV NQDDYNTYYG GISNGLLWPA LHNLPQYISP
481 CFDDPELLRE QWCAYVRVNY LFAINAARNS RAQDFIWIHD YHLMLCGQIM RSLESSLDIG
541 FFIHIPFQPP ANFMTKYKTV ADPIMRALLR FTKVGFQTSR DRDTFVKLVA KHIKRTKIEY
601 DSRLDRYTIE HDGWTCSLGV FPVSIKIADF VNIAKNPQTI IEAEEIKKQI MGRSADGGQL
661 FFSVERFDYT KGISEKLRAW QRYFEKYPDR IGKDVLFQVA VTNRRSVDSY RQYQDDVLAV
721 ADLINQKFKS EDYPEWKPVI FETDGLPRTR LIAHYLAMDI GVVTPSKDGM NLVAKEMLVC
781 NPTASLVLST GAGTEVQLSN AQFYSEQEGK CYHRVEEISN TEAFADNFFA AATESKETRT
841 KHGEKINQFL CVHDIDEWSD QFLDPKWTHE VISQCEVKQL GQFYGLMSRT AQVRRQIVEC
901 VLKGLPIRPH FRYSLENAKN SLESSCKSGT KLSLEADEES GEEKGFEITY DIHDELSEME
961 KDLAFLAFIQ SDEYENAEEF IKTLGSFYEG GPVLFKNEVK QAAEMLQQGI HYNTFFTDRD
1021 GTLKSYACSY PTSVQPAYSA VIQAQFARRC ATFCAIVTTA PLLHTGILEV ATIPEGYYAY
1081 GASAGREWYL NPAQQFKDRS FSAIDLNLMN KVFDIIEELL ERPEFRIFKW IGSGIQKHCG
1141 HITIAKQDVN GTIPSRKVIR LYEQLVKIVN DFDPNGTTLT MRESDLDFKI YVKAKLKGRI
1201 FNKGHGIRLV RERLKPNMSK GNCLVCGDNE SDIPMLEECL KLAGSKVYTI WVTADTNLQE
1261 KVTQLCDRFS CSNIHFVSCP QVLLGAMAYA TAHTLVDERN RKLDYYYDSD TPMDQEESST
1321 LGASLGTSFG N
//