LOCUS CCD66854.1 1382 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans P-GlycoProtein related protein.
ACCESSION BX284606-1649
PROTEIN_ID CCD66854.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="pgp-10"
/locus_tag="CELE_C54D1.1"
/standard_name="C54D1.1"
/note="Product from WormBase gene class pgp"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004004"
/db_xref="EnsemblGenomes-Tr:C54D1.1"
/db_xref="GOA:Q18824"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011527"
/db_xref="InterPro:IPR017871"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR036640"
/db_xref="InterPro:IPR039421"
/db_xref="UniProtKB/TrEMBL:Q18824"
/db_xref="WormBase:WBGene00004004"
intron_pos 57:1 (1/28)
intron_pos 96:0 (2/28)
intron_pos 130:0 (3/28)
intron_pos 174:0 (4/28)
intron_pos 218:2 (5/28)
intron_pos 276:0 (6/28)
intron_pos 317:2 (7/28)
intron_pos 345:0 (8/28)
intron_pos 374:0 (9/28)
intron_pos 410:1 (10/28)
intron_pos 445:1 (11/28)
intron_pos 508:0 (12/28)
intron_pos 555:0 (13/28)
intron_pos 584:2 (14/28)
intron_pos 683:0 (15/28)
intron_pos 722:0 (16/28)
intron_pos 792:0 (17/28)
intron_pos 844:0 (18/28)
intron_pos 878:0 (19/28)
intron_pos 900:0 (20/28)
intron_pos 986:2 (21/28)
intron_pos 1033:2 (22/28)
intron_pos 1080:2 (23/28)
intron_pos 1134:0 (24/28)
intron_pos 1164:0 (25/28)
intron_pos 1233:0 (26/28)
intron_pos 1268:0 (27/28)
intron_pos 1338:1 (28/28)
BEGIN
1 MSNEKNKNES TNKTNEIGNA EKKEEAETED KKSLKSMIYP IEPSTLYIDD LKNSKKAYDV
61 TMDDPLDKSS DSKPKLGFFE PYKRLYAFAD SIDMQLMAMG LFSALLQSAL PPFVWLIMGN
121 FVSISILREE GKLGLKNLTS DYPIDDQFAH SATPAFISML GLSIAMFIAA FCQRIAWEIS
181 SIRQVFRIKK AYIRKLLLMD ISWLESRQSG HVAAMLQESA DSIYNGISDH LPMVVFILSY
241 LLVNIGVCLY IQWDVTLFMC LAIPLLIISR ILYSKWFANT MEEETKLQNK ITNLVNETFN
301 CITTVISFAA QKQKINKFEK LSAEHSKLTE ERLRSSVVFD SLTQILLTEL IFTGALCYGI
361 WRVADNSPGR LCALAINMLY MCVTSISIGF HMNGATRAKD NAKEICEVLN EQPKIEVELA
421 SIDNNIDYVP VTRCKYRRQS MKFMGKGALH FRDIHFSYPS RKETEVLRGI SFKVEAGEKI
481 AIVGSSGSGK STLTALLLRF YDPTKGAILL DGENIKTMCP DDLRGQCSLV SQEPVLFDGT
541 ISDNIRYGRL DATQQEINDA ARKVGAWKFI NSLPDGMQTR VGERGHQLSG GQKQRVAIAR
601 AVIRKPIVLI FDEATSALDN IHEEEVNAAI DLASEGLTTI TIAHRLSTIK NSDRIIVLHE
661 GKIVEEGVPD ELIADANGIF HKMYNDQRLD QLTQQHQQLH QQQAKPPSLQ QQMSFSPPPN
721 MDPDQQRRAW ARSSLGGNKK LGKSYSVNSM EKEKLKLPVM SKKKSERLDY KYSKVHSMDV
781 KQHTDSMHDD DDLPGKETNF TVLKDLIYSY RTGLPLLAGA IPTTIVRAVF YLLICFQVAS
841 VLEISIAPDE ERALQIFIVA AIYTALIIVK TIFEALGRIF IALYGHGFCK FMRNEMFRKV
901 LRHGAAYFDE ERNSPGRLVH KVINESSTLN EIMEQKLDML IPGVVCSLFS IVCALWINWK
961 MALLCSFQFP AYFVIRILQI REGTKRQRQM VDEEKKAANL ASVVLANMST IKAYNLQSHF
1021 YNVFCDALKP VSQCMQKQSL ISALVFACQY SFTYILIAIT LHFGKVMMLA NEISVFDYMR
1081 VVLLTQFGAN FFSQLIASVS DFTKAQIAAE NVMRVIREPP VDMDNLSEEG LRPKLEGNLC
1141 LKDVSFRYPS RPIVPVLTNL NLKVRGGESI ALVGPSGSGK SSVISLFQRM YNATDGVVII
1201 DKYNIKSINP AYLRRCIVQV GQEPDLFSFT IKENIAFGMM ESEATIDKVI EAAKIADIHN
1261 FITSLPQGYD TEVGEFGAQL SGGQKQRIAI ARAIIRKPTV LLLDEATSAL DSASEREVQN
1321 AFERVKRSTK TQCTCIQIAH RLSTIRNVDK IYVIVHGEIA EEGSHEQLIN LKGIYYEMNQ
1381 MT
//