LOCUS CCD66769.1 975 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Protein vav-1 protein. ACCESSION BX284606-2140 PROTEIN_ID CCD66769.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="vav-1" /locus_tag="CELE_C35B8.2" /standard_name="C35B8.2a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00006887" /db_xref="WormBase:WBGene00006887" intron_pos 37:2 (1/16) intron_pos 68:0 (2/16) intron_pos 126:2 (3/16) intron_pos 173:2 (4/16) intron_pos 201:0 (5/16) intron_pos 304:2 (6/16) intron_pos 373:0 (7/16) intron_pos 565:2 (8/16) intron_pos 615:1 (9/16) intron_pos 655:1 (10/16) intron_pos 718:0 (11/16) intron_pos 754:2 (12/16) intron_pos 837:2 (13/16) intron_pos 868:0 (14/16) intron_pos 898:0 (15/16) intron_pos 946:0 (16/16) BEGIN 1 MNGGCDLWIG CARWLRDMKV LTTDKNGTML EFASVLRDGI LLCRLANTLV PNGIDQKKIM 61 RTNQPSPFLC CNNINYFAMF CKTYFNLEDA DLFTAEDLYY MNGFQKVLKT LSFLSHTKES 121 LSRGVDPFPD TDNNQEGTSN GSEFEDDVEI YQSLHDNIEN VDPNRTIYGP ITSADPEEQQ 181 SEQLYDRIVT NRKPSMNEND LQNTPTLKRN RCIRELYDTE KNYVAQALVT IIKTFYEPLK 241 GIIPTSDYNI IFGNIEEINV LHTALLADLE YPVKVALGLS DATPPRPISL NECVPQTIGE 301 VFIKYRDQFL AYGKYCSNLP DSRKLSNELL KTNEFISRNI NELTAQGNCK FGMNDLLCVP 361 FQRLTKYPLL LKELQKKTDL ASPDRKSLEE AVEVMEDVCN YINEESRDTN AIKVIDEIEQ 421 SITDLSMPLN VKLHDYGRVN LDGEVKMAES TLTQAGKPKQ RYIFLFDKVI VVCKAANKVM 481 AAKTTGASAR TNTFTYKNAY VMSELTIDKN ASLDVKSGGT ITRRTQYVII MTRDRNENNE 541 ITQLTFYFKN EATRNNWMTA LLLSKSNVSP TDYLRDTNHK VAFHSFRVDV KNPATCDVCD 601 KLMKGLQYQG YKCESCNMSM HKECLGLKKC EAVRKSTHET RSSQSFNCNR PRFHIHEGDI 661 VVANSNSTPS DLSYLQFAKG DRIEVIKMQG HNRFTGCLIN NRNRTGLVHL DHVSQSRTTS 721 MIGLSPIDSP AGSIAPRVVR NESTVLPNKL LSDGSSRSLS GPHGSRSSRN SSSSTINGSM 781 DSVPRQQDYV NTEISEFLWY MGEMERAKAE STLKGTPNGT FLVRYSKNRK QTAISLSYKN 841 DVKHMIIEQN SDGKVYLDED YIFNSTVELV QYYRSNNLIE IFAALDTCLK NPYSQCKVFK 901 AVHDYDAPSP NNEGKFLSFK TGDIVVLLDT VGEDRGWWKG QVNNKSGFFP LSYVKPYDPA 961 TEGSSSPVTP TSSSS //