LOCUS CCD66253.2 1110 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Patronin (microtubule-binding protein)
homolog protein.
ACCESSION BX284606-3973
PROTEIN_ID CCD66253.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ptrn-1"
/locus_tag="CELE_F35B3.5"
/standard_name="F35B3.5a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004121"
/db_xref="EnsemblGenomes-Tr:F35B3.5a"
/db_xref="GOA:U4PAZ9"
/db_xref="InterPro:IPR001715"
/db_xref="InterPro:IPR011033"
/db_xref="InterPro:IPR014797"
/db_xref="InterPro:IPR022613"
/db_xref="InterPro:IPR032940"
/db_xref="InterPro:IPR036872"
/db_xref="InterPro:IPR038209"
/db_xref="UniProtKB/Swiss-Prot:U4PAZ9"
/db_xref="WormBase:WBGene00004121"
intron_pos 19:0 (1/21)
intron_pos 53:0 (2/21)
intron_pos 87:0 (3/21)
intron_pos 125:0 (4/21)
intron_pos 153:2 (5/21)
intron_pos 227:1 (6/21)
intron_pos 247:2 (7/21)
intron_pos 297:1 (8/21)
intron_pos 391:0 (9/21)
intron_pos 431:2 (10/21)
intron_pos 505:1 (11/21)
intron_pos 564:0 (12/21)
intron_pos 633:0 (13/21)
intron_pos 705:0 (14/21)
intron_pos 768:0 (15/21)
intron_pos 794:1 (16/21)
intron_pos 838:0 (17/21)
intron_pos 970:1 (18/21)
intron_pos 1007:0 (19/21)
intron_pos 1039:0 (20/21)
intron_pos 1064:2 (21/21)
BEGIN
1 MDFPLPALLA IEDYDENEGK LAASIRWLIS RVYEEKRDMP DKLRDGVQRD ENGHFQIDEA
61 VVGALCNGSL YAQAAAKIFK ESALVTKGHG AVLAVLTDYG IDVLHDGNEL VEEAQLVASA
121 PFNMSAHLAI IDALMMAHLR DVIPVSRVVE AVSRHTAVEP SEKPIDSVDA LLFWINKICL
181 LVRDDVERED SNTNIPEMED LYEDISDGQC LCALLHWYRP HEMPVADISF NDSATTRDCQ
241 YNLMLLQLFC RHHLAVDPFH FEIEDLLYLR DSLQMNVNAF LADLFVQFEP PVTPEPVETP
301 RIGPSPRRFV PASAIPDLRA ANAAARSSMH NRNRPRMYNP PPAVSHSQGP SRSVSRMSQD
361 SLFYSRPASI ALQRRSMDQD SVTDFQTIRQ GFENQAGTAQ LNRYDGSVTA SVRLAMEEKR
421 RKHDQQMAQM SSANETERLE KSKAAFFALR KNDNDQTSKG KEEWYDHFEA KLRALELRVG
481 LEEGEDGTQS ARLNRASSQP SVVQAGQTYP ANYMTLPMNA AAQMTQSYIQ HPQTPHDYYM
541 QQQMQQQQQQ QAQAQSNYAS PSQLRNSLSN GMINHAGYIV QSMYPGDYQQ QQQQMQMQQG
601 QMPVQPVGAY TPEGYFIPHH MQPIPVQQGY QQMPQPGMGF NGMPATSQPG FNMEGSPAQM
661 GYIQTANKPL DMEMPMQQQP PQQPPQQMLP PNQNAFHLHS KSDDATQVQA DPPLEINRNL
721 TNWGMTYKQE MPARSIPSRR TWQNETFIKN ELDLVNSKES VPHITDETTT QPEEAARRFP
781 DLMLDNHSEN LAPGRGFSRQ NDRDDLSTGR KSDDSPTDTP GRTFDDDEGS GENMEKIANE
841 RRIAKKAALI AKTMKRKEEI ETKVDLAEQR NAERRQVENE KKELALRKKV EKEQQRQKIL
901 DEYKRKKLEK ELGAELSARS TGRGHSQPPF IRTKSQMSEV TESSRQNTPR MRGQSSVEQR
961 VSVSSLAEPT HKLYAKTVTK SNRGLINNAL QFSVFPGAVN NATRQATITQ MASSSSKHFL
1021 ILFRDQKCQY RGLYTWDEIS DTAVKISGQG PPKCTEAMMN SMFKYDSGAK NFTNIATKHL
1081 SATIDGFAIL DQYWQKARIP HSGTPAHKNN
//