LOCUS CCD66172.3 742 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans SID1 transmembrane family member 1 protein. ACCESSION BX284606-3956 PROTEIN_ID CCD66172.3 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="C30E1.4" /locus_tag="CELE_C30E1.4" /standard_name="C30E1.4" /note="Partially confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00016253" /db_xref="EnsemblGenomes-Tr:C30E1.4" /db_xref="GOA:O17334" /db_xref="InterPro:IPR025958" /db_xref="UniProtKB/TrEMBL:O17334" /db_xref="WormBase:WBGene00016253" intron_pos 57:0 (1/15) intron_pos 90:0 (2/15) intron_pos 120:0 (3/15) intron_pos 149:2 (4/15) intron_pos 166:2 (5/15) intron_pos 197:0 (6/15) intron_pos 227:0 (7/15) intron_pos 252:1 (8/15) intron_pos 275:1 (9/15) intron_pos 298:1 (10/15) intron_pos 358:2 (11/15) intron_pos 480:1 (12/15) intron_pos 526:0 (13/15) intron_pos 560:0 (14/15) intron_pos 608:2 (15/15) BEGIN 1 MMRLFFLNII TIFHYCKADD YHHFQNLTLG ESYTNLTTKG DLITSLFTVH LENNLTLSAF 61 RVSIASDSAS LNNPFNVNFY HAKTIHNIVL PRVQTQNGKS FEYLFASDTL CDNNRSTIQL 121 HQPIHLSVAS YSQSVFSLKV ESVENFLIGS NKFNSSASPS APRYYMYTFP DDVDKVNIRV 181 TSETEICGKI VTRQVKCPLF EASGLVELSD AHFFQTFTKF AGFSIRKNYI GRQFHIAFIV 241 NPDETLCGKP SNLIGIFGNL DRIKNATILI SPVDEHKFLS VVPLLVYMTS IAIVLTLTYV 301 KFKFMDSHEN NELDVFAETN SEGIVVVDKV WLFEPPSMVV SHNEYQKQGL VKDSKYFNFL 361 FFQVFGFVLP AGITLFVSRQ QNRNNLDVCY LNYLCSLDVF GFNAFNSMTS SSSIAVIGIL 421 NLIIVFRKKI FRYQVPRFPT SHGVQKRQAP KVVFLLGLCA VGIWSIVTVN CPRSYTYHLN 481 YFTRLWVWHS ITMWIYSKRH GIQKWQQLYI LAFSSASQFL ALAANIFELS GVPGFIIKIL 541 FAMLSFSSTA FFCFKYYFQR PSGIQENQWI VSPLQTVECV LSEQNNVYRP LKSKLALMTC 601 LMLSTFFCAT LPCISNSLLY VAILLVASGQ CQIYLYYYII QKIRFERKSF KKSYMFYTVT 661 IFAIMAINEF SSGILLSRSF TSDVSLTPAK SREMNANCFL PGTDWKDILN YSSAFDLLMI 721 MIFMDFIDSN LKSVPKKHIF VF //