LOCUS CCD65956.1 997 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans JmjC domain-containing protein protein. ACCESSION BX284606-2050 PROTEIN_ID CCD65956.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="R04E5.8" /locus_tag="CELE_R04E5.8" /standard_name="R04E5.8a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00019871" /db_xref="EnsemblGenomes-Tr:R04E5.8a" /db_xref="UniProtKB/TrEMBL:Q9GYL4" /db_xref="WormBase:WBGene00019871" intron_pos 217:0 (1/7) intron_pos 235:0 (2/7) intron_pos 255:2 (3/7) intron_pos 305:1 (4/7) intron_pos 670:0 (5/7) intron_pos 891:1 (6/7) intron_pos 986:2 (7/7) BEGIN 1 MHGHDRPGSS SGGYFNPPRN NQYHYPENHH HPYPENIANL VPPSNFQAMH YNHNYMAHAA 61 SIAHTYGGYP PPYPYQHPHQ PPPAHPHHLQ HPHPYAYPGY PVPGQEGHQV PAPQHGDHEA 121 SPPPPPPPRK SRAGGSSPPP PPPPRVPRTP PPRSPPPRRP PMTPPSPQRR PPRTPPSPEP 181 RNPPRTPPSP IPPPPPRLNS HDRRALRARR PMVHRPAPYG RRSISQGPGR NNDDWGSREY 241 GKYAERLAST ELKKLHLERE DYKQVLRVVA NAAKTFRFDD FEVRSHLLSG YRFYMNGEDA 301 NGTKQFSIPH NMDRPPAPRY WIIDNEVRSN PPSPVFRPEA SLSPSVNVDY GEGSSNQAAQ 361 MFEPGEDQTA FYRRLLAGFA AQGRTFGQRE GEIPAIYGAD GLLTEWGYEL HLLNQARQLE 421 SKPPLVHYEE VGFDRKDDDE TYEPYQGGQA QPDGSPSEYS PNHVRRGPKT PPEREESVEF 481 SPGHIPVGPK TPPMPDESLE DDKRSPIMDG NQFEEMELYP MDPEQEVSMN FVPVKPQAVV 541 PEQVASEENE ANPMEVDSGD LMKLAVDSID QNAAVVSNGS STPFSVSTHA DQIVPKIENK 601 RPAVQDLIGE VLEKKKAKSS AYEKPEEGEI VDAENAGIAS SKASKSADDK IEILASHGSN 661 SILKSAHDQA SKASKSSRKR SKKSKKSNET SSSSSDERLI HSQSPPTPQN TTSSSDVSSS 721 SSGGSASTSE SSSSAPSAEQ VSTPKKSKKN KEKRRDQQHG ERSSRETERL ENNERPNRIS 781 SANSGVQSNR SSERRQGNNN SRRRGSHGAP RSRNSNGRQQ GQRPIKQFQG PTSHYSKDRE 841 REINMHLARM VRDQIEREGG EALEPAETEY SHFAHDTSGR GRHQQNDGYR GDRRHRSPGK 901 HIAPARAHNR GQHHNRGHHH GPPRNHNQDR NRHRNHDGNR HQNQDRSRHH NQDRNRRQNH 961 DRNRHQSQGR NRQQDHERGD EAHEEARPDR IGQAVRR //