LOCUS CCD65832.1 784 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans AMP deaminase protein. ACCESSION BX284602-1835 PROTEIN_ID CCD65832.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ampd-1" /locus_tag="CELE_C34F11.3" /standard_name="C34F11.3a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00016415" /db_xref="EnsemblGenomes-Tr:C34F11.3a" /db_xref="GOA:H2KZ18" /db_xref="InterPro:IPR001365" /db_xref="InterPro:IPR006329" /db_xref="InterPro:IPR006650" /db_xref="InterPro:IPR032466" /db_xref="UniProtKB/TrEMBL:H2KZ18" /db_xref="WormBase:WBGene00016415" intron_pos 31:0 (1/11) intron_pos 46:1 (2/11) intron_pos 64:0 (3/11) intron_pos 98:2 (4/11) intron_pos 139:2 (5/11) intron_pos 216:1 (6/11) intron_pos 253:0 (7/11) intron_pos 292:2 (8/11) intron_pos 499:2 (9/11) intron_pos 559:0 (10/11) intron_pos 732:0 (11/11) BEGIN 1 MPKDTNGVHF FNPAADNSDE ETTAASPSSD VARPNPLDSA REYGMKTVDS ELFDSGPFKK 61 NFAFGNADHS TASPFEISTT PIEVNESRAH KTIEISNRAR LESQNDGCLS PSSLKSVLDE 121 IQTEPRCKSP QHIDLHTFRD AVDVNYQRMA ITGEELSGVP LEDLKTASGH LIEALHLRSK 181 YMERIGNQFP STTRNFLSGH YPANLPKHRV KNTETTVQTS FNPPDPPKDH WGKNDPLPKY 241 EKIYHLRRNR GVTEICNDDG SIDQQFKNVN VTKEEFLNDT EKLTAMIVDG PLKSFCFRRL 301 SYLENKFQLH VLLNELRELH EQKGVSHRDF YNIRKVDTHI HAASSMNQKH LLRFIKKKIK 361 TEADTVVLNN NGTKVTMKEV FKKMGIDAYD LSVDMLDVHA DRNTFHRFDK FNTKYNPVGE 421 STLREIFIKT DNYVGGKYFA DLLKEVLSDL EDSKYQHAEP RLSIYGRSKN EWDNLAKWAL 481 THDVWSPNAR WLVQIPRLYD VYRAKNMVKN FDDMLDNLFT PLFEVTNDPS SHPELHLFLQ 541 QISGIDSVDD ESKHEFVNFD RSTPCPPEYT DLENPPYNYY LFYMYRNICA LNAFRRARGL 601 NTFALRPHCG EAGHVSHLLT GYLTSESIAH GILLRKVPVL QYLYYLTQIG IAMSPLSNNS 661 LFISYQRNPL PEYLQKGLNV SLSTDDPLQF HYTKEALMEE FSIAAQVWKL SSCDMCELAR 721 NSVMQSGFED KVKIHWLGPN YKEEGVLGND IHRTNVPDIR VSFRHEALVD ELYNLFRVQN 781 TLKQ //