LOCUS       CCD65724.1               901 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Vacuolar protein sorting-associated
            protein 41 homolog protein.
ACCESSION   BX284606-1183
PROTEIN_ID  CCD65724.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="vps-41"
                     /locus_tag="CELE_F32A6.3"
                     /standard_name="F32A6.3c"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00017974"
                     /db_xref="WormBase:WBGene00017974"
     intron_pos      95:0 (1/12)
     intron_pos      137:0 (2/12)
     intron_pos      183:0 (3/12)
     intron_pos      217:2 (4/12)
     intron_pos      319:0 (5/12)
     intron_pos      361:2 (6/12)
     intron_pos      424:0 (7/12)
     intron_pos      488:0 (8/12)
     intron_pos      704:0 (9/12)
     intron_pos      737:1 (10/12)
     intron_pos      807:1 (11/12)
     intron_pos      878:0 (12/12)
BEGIN
        1 MDETHENEAS DSFDPVFENS YHDDVTFNTE DDDEPPLEPR FKYERLKGEE TLPFMKTATF
       61 TSIDLHDKFI AIGTATGLIY ILDHHGYGNF DSVPPLKPHR CAVSKVKFDE TGSYVLSCAN
      121 DSKIVVSGVG NDKLCCTINI QVMPKSIYFS PDFIRQQSGH CFIMGERNLV LYEKRMFQYK
      181 ASSLYSGSER DGFIHCCSWN ENLIAFTNDT GTRVYERGAE RIITSVQPSH DVDRVRSSRS
      241 PPKHTWMPEN NLVIGWADTV TILKIRDDDG VKKGEVHHIF HVSMFICGIS YIPESGIDNM
      301 ELFLVGLQLE GEDFDDCASV ISTVTTLTAL ESSACTILKT SVIRPLGLKE FELQSEDMIE
      361 SVKLSNHTLP YMIHGLGIPY LATYFILTTK HIIMAVPYGP EDGIRWRLKY KLYDEALDMA
      421 KHNADLLSKT DLSPKKVGRM IIEGYLTGKR ARAAASRLPL ICGECKEEWE WAVNQFEEVK
      481 LCTLLAEVLP DGTPTLDPEC YQKVLIACLF NNVKQFRKLV QTWSPDLYMT SFIIDRTQWR
      541 IQQISKSGNL ADVDETERVL MDALAHLYLY ERKYESALKI LMSCQDFQIF NVIDKHQLFD
      601 LVKDQITELM NINSERALRL LLDNADSVEP SFVMEKIGRQ PKLQLAYLTK LMSRNEGTEF
      661 ADKAVQLYAE YDQKKLLPFL RKNANYNVNK ARKLCSDKGY IEETIYLLAK SGNHYDAVKM
      721 MVREYRNMEK VIDYCKDQND PDLWIHLLGV VAEFPAHFSQ LIIEASNCLD PLLIMDKLPD
      781 DSDIPNLSEA LDKLLVDYTN HAELQQCCYD STLNDLNVLT QGLISAADES VSVNIVSRCS
      841 LCAQIIINSN QETTKKFSDI KVFKCGHIFH LACSTSEMER RQSIEEGLCI ACSDQIELIN
      901 V
//