LOCUS CCD65724.1 901 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Vacuolar protein sorting-associated protein 41 homolog protein. ACCESSION BX284606-1183 PROTEIN_ID CCD65724.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="vps-41" /locus_tag="CELE_F32A6.3" /standard_name="F32A6.3c" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00017974" /db_xref="WormBase:WBGene00017974" intron_pos 95:0 (1/12) intron_pos 137:0 (2/12) intron_pos 183:0 (3/12) intron_pos 217:2 (4/12) intron_pos 319:0 (5/12) intron_pos 361:2 (6/12) intron_pos 424:0 (7/12) intron_pos 488:0 (8/12) intron_pos 704:0 (9/12) intron_pos 737:1 (10/12) intron_pos 807:1 (11/12) intron_pos 878:0 (12/12) BEGIN 1 MDETHENEAS DSFDPVFENS YHDDVTFNTE DDDEPPLEPR FKYERLKGEE TLPFMKTATF 61 TSIDLHDKFI AIGTATGLIY ILDHHGYGNF DSVPPLKPHR CAVSKVKFDE TGSYVLSCAN 121 DSKIVVSGVG NDKLCCTINI QVMPKSIYFS PDFIRQQSGH CFIMGERNLV LYEKRMFQYK 181 ASSLYSGSER DGFIHCCSWN ENLIAFTNDT GTRVYERGAE RIITSVQPSH DVDRVRSSRS 241 PPKHTWMPEN NLVIGWADTV TILKIRDDDG VKKGEVHHIF HVSMFICGIS YIPESGIDNM 301 ELFLVGLQLE GEDFDDCASV ISTVTTLTAL ESSACTILKT SVIRPLGLKE FELQSEDMIE 361 SVKLSNHTLP YMIHGLGIPY LATYFILTTK HIIMAVPYGP EDGIRWRLKY KLYDEALDMA 421 KHNADLLSKT DLSPKKVGRM IIEGYLTGKR ARAAASRLPL ICGECKEEWE WAVNQFEEVK 481 LCTLLAEVLP DGTPTLDPEC YQKVLIACLF NNVKQFRKLV QTWSPDLYMT SFIIDRTQWR 541 IQQISKSGNL ADVDETERVL MDALAHLYLY ERKYESALKI LMSCQDFQIF NVIDKHQLFD 601 LVKDQITELM NINSERALRL LLDNADSVEP SFVMEKIGRQ PKLQLAYLTK LMSRNEGTEF 661 ADKAVQLYAE YDQKKLLPFL RKNANYNVNK ARKLCSDKGY IEETIYLLAK SGNHYDAVKM 721 MVREYRNMEK VIDYCKDQND PDLWIHLLGV VAEFPAHFSQ LIIEASNCLD PLLIMDKLPD 781 DSDIPNLSEA LDKLLVDYTN HAELQQCCYD STLNDLNVLT QGLISAADES VSVNIVSRCS 841 LCAQIIINSN QETTKKFSDI KVFKCGHIFH LACSTSEMER RQSIEEGLCI ACSDQIELIN 901 V //