LOCUS CCD65700.2 920 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Caskin-2 protein.
ACCESSION BX284606-265
PROTEIN_ID CCD65700.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="C46H3.2"
/locus_tag="CELE_C46H3.2"
/standard_name="C46H3.2a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00016725"
/db_xref="EnsemblGenomes-Tr:C46H3.2a"
/db_xref="GOA:Q18662"
/db_xref="InterPro:IPR001452"
/db_xref="InterPro:IPR001660"
/db_xref="InterPro:IPR002110"
/db_xref="InterPro:IPR013761"
/db_xref="InterPro:IPR020683"
/db_xref="InterPro:IPR027013"
/db_xref="InterPro:IPR035497"
/db_xref="InterPro:IPR035498"
/db_xref="InterPro:IPR036028"
/db_xref="InterPro:IPR036770"
/db_xref="UniProtKB/TrEMBL:Q18662"
/db_xref="WormBase:WBGene00016725"
intron_pos 16:1 (1/18)
intron_pos 64:1 (2/18)
intron_pos 113:0 (3/18)
intron_pos 145:0 (4/18)
intron_pos 182:0 (5/18)
intron_pos 221:0 (6/18)
intron_pos 259:1 (7/18)
intron_pos 290:0 (8/18)
intron_pos 341:1 (9/18)
intron_pos 380:1 (10/18)
intron_pos 406:2 (11/18)
intron_pos 436:1 (12/18)
intron_pos 476:0 (13/18)
intron_pos 572:1 (14/18)
intron_pos 673:0 (15/18)
intron_pos 825:1 (16/18)
intron_pos 864:2 (17/18)
intron_pos 890:2 (18/18)
BEGIN
1 MSSKKLLRRF SSSISDLLSI PKRDLCDNEE FTPLHNAVKM GNTVMAKNFI DSKSVWIDEP
61 DCRGQTALHL SITYGDTEMT SLLLKGGANV DSVDYDGISA CHIACKDGMI DHFNLLIYYH
121 ADICLVDRSG RTPFDLACEY GQEKMLERLF SCGLRKINFQ YMDHLHTASA FHLAAGSGQV
181 QILSMLLQHN WDLNFVTESG SALHMAAGSG QVQVVRFLLN SGIDINITNS DGLTAYAWAK
241 KNSSRNPITY KEIRFLLKNF HTFTNAVAVE DFCGVEANEL SLSIGDQVWV IERSTTQVWK
301 GIVFGRKGNS RSGFFQSNVI EDAGASDGIL TTPKIETRKN HNKMSSRLAK TPKNPTSTFS
361 KPVPAPAVPR RSCSIVQYHD INRNTPSQMS SFGRTTSCYG DTSNQRPNNM MTKSTSGSFG
421 SDSFHVFNGS RTSTPNPPTA MYSSSSCLYP VKVENHYASI GSSSSQSSSG FESAKCSTST
481 SASSFPSGVQ SNESGCESAH SVRSVESGSG SSSSIHGLDD SLYRSIHEVD VTSMVQSGVP
541 HAEVLANWLD SINMSNYLAV FLKQGYDLQT IARCTPADLL SLGIKNPDHR KKLMSDIHSW
601 KIIDQWPSVV PNNSLREWLH AIALAEYIPM FESQRYTSVS DVLDLQWEDF EDIGVKRLGH
661 LKRFGLTIKK LKDHQRHASN SLHPSHYAVH SNTSSYNSSY SSPQSFGYST PSPIQRQPAS
721 ASRLNDPPPP APSAPNRAFR ASCDKIDYLS YQQNNWKSAS ALPEAPAFLS VKPKSTSDLL
781 FGDDTPIRLN LVPTGKILSD ISKLKKDEEE DQELDDPNEC PPPPAPLHCN VGLHHISSGN
841 LSSFNSSLSN DQFPFANENC GTIRYSSTRP ATAFDIPAAL PPLLSDDHAS DHSSVGSCNK
901 PTIDEMLQDI QGAMDNLISS
//