LOCUS CCD65687.1 766 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Discoidin domain-containing receptor A protein. ACCESSION BX284606-1226 PROTEIN_ID CCD65687.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ddr-1" /locus_tag="CELE_C25F6.4" /standard_name="C25F6.4" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00016104" /db_xref="EnsemblGenomes-Tr:C25F6.4" /db_xref="GOA:Q18163" /db_xref="InterPro:IPR000421" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR008979" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/Swiss-Prot:Q18163" /db_xref="WormBase:WBGene00016104" intron_pos 22:1 (1/14) intron_pos 84:0 (2/14) intron_pos 135:0 (3/14) intron_pos 184:1 (4/14) intron_pos 220:2 (5/14) intron_pos 254:1 (6/14) intron_pos 289:2 (7/14) intron_pos 315:2 (8/14) intron_pos 351:1 (9/14) intron_pos 407:0 (10/14) intron_pos 511:2 (11/14) intron_pos 611:2 (12/14) intron_pos 677:0 (13/14) intron_pos 727:0 (14/14) BEGIN 1 MQIALVLLAI YGTTTTNTLR IDQCGENALG MQNGDIADSQ ITASSSFDKQ SVGPQNARLH 61 SELASGAWCP KPQINSKSYE FLQVTLNDTF LITSVETQGR YGNGTGREFA SHYMIDYLRP 121 GSQWIRYKNR TGHVYMDGNF DTTTPVIRVL DPPIVASRIR FVPSSKNTRT VCMRAEIHGC 181 KHEGVTYYST VPDGSRLDTL DFKDSMFEDS QIYTESGIKR GLGLLTDGFV AQASPFEKNQ 241 MNNSWIGWNR DTTDGRITIL FEFEEVHNFT DVVLATFGNR IDGIDVIFSQ DGKTFPLFSQ 301 ISSSERQSLN NTSRRYDFRV PLHNRAGRKV RISIKFSSDW MFLTEVHFTS AANLTLLSEK 361 IPPPSSAATQ QLLVVCGIIF LTIFACVAYC VSVCLKRRQK NKSVDSNVKK DLIITHMGNK 421 PTCHVFPSNG KLSNGHYEVA NDILYARSQK STLLSVSSKS TFSCRAIPPT WTDFNFPPPP 481 EGREEHTYSQ PVSPENSSNG SYKSVRKIQA LKKYPSSALL IGKAIGEGKF TMIKECIIFG 541 GLKCAHKSTK EEDCVHGTRA LGDEIACLLQ CGRHPRIVEL FGVDESYNLL LEHVEYGCIR 601 NFWMASEAPL DTEFLVRICK DIYSAMAYLE SIRIVHGHFT PNNILMDGEF HAKVCSPRGP 661 SHHAQLRYSA PESIVNNEFT HKSDAWAVAT TVYEMAYQCR QRPYEELTNE QIVDNACALL 721 DHQPNAVVPL MPTVFNYEIL QLLTRCFRVD QLERPTFERL VKPFQD //