LOCUS CCD65564.1 755 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans 4'-phosphopantetheine phosphatase protein. ACCESSION BX284606-1133 PROTEIN_ID CCD65564.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="pnk-4" /locus_tag="CELE_C42D8.3" /standard_name="C42D8.3" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00006862" /db_xref="EnsemblGenomes-Tr:C42D8.3" /db_xref="GOA:Q18580" /db_xref="InterPro:IPR002791" /db_xref="InterPro:IPR004567" /db_xref="InterPro:IPR015844" /db_xref="InterPro:IPR035073" /db_xref="InterPro:IPR036075" /db_xref="UniProtKB/TrEMBL:Q18580" /db_xref="WormBase:WBGene00006862" intron_pos 51:0 (1/8) intron_pos 113:2 (2/8) intron_pos 234:2 (3/8) intron_pos 287:0 (4/8) intron_pos 473:2 (5/8) intron_pos 528:0 (6/8) intron_pos 682:2 (7/8) intron_pos 724:0 (8/8) BEGIN 1 MDIAQRKIDF HRLVRDAPMI THICFDACSK TVKIVYSSSV PLSHTTLECT RILSKQSEDR 61 IYCIQVQYPD FPLILNFFGE NCPLLKGTTV DFVVTASQNA EIEEVIRKVL DVELRHVDAF 121 NGLVNGTSFL LRNIEAECFT YSFDESQEYE FQTLNNDSMF PYLLINIRTG VSVVLVEGEN 181 QFKRLGGSSI GGGSFLGLTE LITGVSDIEE MMDRALQGSP DEFDIFIRDI YGDRASNFNM 241 DPHLLAASFG RVTRGETVRR AENFDEQSKN NAILSLLRMI LYNVSQLAYM LSEISNVKRV 301 FFNGFLVRNR PIVMKTLSFA CNYWSSGKLR AYFLRHENYT TGLGAFLENF PNADLYWKEY 361 CSGSTALGRF VPVEPLETGF KTQTFALRCT GFKAAPFALL VDQDGKPDTI DFNKDEEARN 421 FWIEILDKTI NDITKFAIAS QENCSNKEDL TNRAEDFQSD FVKTMDIIKE HHVAYGNSNA 481 RNMLEVREQI LQEKGFDDIY VQKKHAENCT AIAELPRVLA KIDELKNTGD EKTVLEYVSR 541 GLLAGNVFDW GAKEVVKMMN SESGLTFQTA IDHVENRPWL FDGFDSFYKK HKEYKSVLIF 601 VDNSGFDYIL GIIPFARELL RNGSRVIICA NTSPALNDLT YREMVELAPE LKNADSDLAK 661 FIDSNQMMFV QTGQESPCMD ARRVHQDLNE TVKKFNTDLV VIEGMGRALH TNFNVQFKCD 721 SLKAAVIKTQ WLADRLGGKM FSVVFKHEHG VSVTN //