LOCUS CCD65563.1 1613 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Vitellogenin-2 protein. ACCESSION BX284606-1135 PROTEIN_ID CCD65563.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="vit-2" /locus_tag="CELE_C42D8.2" /standard_name="C42D8.2" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00006926" intron_pos 292:0 (1/4) intron_pos 387:0 (2/4) intron_pos 1447:0 (3/4) intron_pos 1529:1 (4/4) BEGIN 1 MRSIIIASLV ALALASSPAF ERTFEPKTDY HYKFDGLVLS GLPSASSELS QSRISARARI 61 QAVDDRYIHL QLVNIRMAAS HLPESEQMPS LNSMEQRELS EEYKQMLELP LRAQLRNGLI 121 SELQFDKEDA EWSKNMKRAV VNMISFNPIA PRNEIEKIES SYDKEEQSEE NTSFFTNEKT 181 LEGDCQVAYT VIREQKKTII TKSINFDKCT ERSEIAYGLR YSSECPECEK DTELIRPQTV 241 YTYVLENEEL KESEVRSLYT VNVNGQEVMK TETRSKLVLE ENHSIKSHIK KVNGEKESII 301 YSSRWEQLVE DFFKNGDKAE FAPFEKFPLD KKMHLIKTIT EQIQEVENNM PETSHFLARL 361 VRIFRTTSTS QLKEIHETLY VKADKKIQSL MEHALAIAGT KNTIQHILVH MENEDILPLG 421 QILKTIQETP FPSQSIAEAL IKFAESRVAK NNLVVRQAAW LAAGSVVRGI VDYKNIRPLV 481 REDKRELKEK FLRVFMQQYK DAETTYEKIL ALKTIGNAGL DISVNQLNEI IVDKRQPLPV 541 RKEAIDALRL LKDTMPRKIQ KVLLPIYKNR QYEPEIRMLA LWRMMHTRPE ESLLVQVVSQ 601 MEKETNQQVA ALTHQMIRHF AMSTNPCYQR VAIVCSKVLS FTRYQPQEQM IASSYAQLPL 661 FLQNSFSGAQ FDFAAIFEKN SFLPKDLHAS LDAVFGGNWN KYFAQIGFSQ QHMDKYVQMA 721 LEKLESLEKE STTVVRGRRI QTGIKLLKEL AQKMNIRARP ATYTEKDAFA MVYLRYKDMD 781 YAFLPIDRQL VENLIEKFTS NGKVQFSEIR RLLNQELEFE THHAAYFYEA IRKFPTTLGL 841 PLTISGKIPT VISAEGQFSL ELEGTELRLT VEARPSVAAT HVYEMRMFTP LFEQGVKSVQ 901 SVRAYTPIKI QAVAGMKRNF EIVYKVVVPE NQKSIVSLTT RPVVFLRFPG FSKFEYIEAE 961 ERTVVVPQWQ QKTQEIEKVF NFLGLEVSTR GNILNQHTLE NWLLAEQDFE VSVENKNRPA 1021 EFTARLTVGQ LEKTELSQIK YNKIFEKEFE LEQENTESRR EYFNKMVKNI QKEQGYKSVI 1081 SLKLEAPRDY TMNTELTTVC DKQVRMCQWE VEIRRSPILE ETKEWTLRSQ LLVVRPEMPS 1141 SLRQLRDQPH REVQLSLTST WGSQKKSEVT VNAQLQQSKE QKKYERNMDR QFNGMPEYEL 1201 LIKAARLNQI NAVAEYKLTR ETEQVLARYF DLVKTYNYWT VSSRPENNEN DRVVVQLTVE 1261 PMSRQYVNIT MQSPMERIEL KNVQVPRVYL PSIAQRSVKH QLTEASGSVC KVQKNQIRTF 1321 DDVLYNTPLT TCYSLIAKDC SEEPTFAVLS KKTEKNSEEM IIKVIRGEQE IVAQLQNEEI 1381 RVKVDGKKIQ SEDYSAYQIE RLGESAIVIE LPEGEVRFDG YTIKTQLPSY SRKNQLCGLC 1441 GNNDDESTNE FYTSDNTETE DIEEFHRSYL LKNEECEAEE ERLSEKKNYR KYERDEEQSD 1501 EYSSEETYDY EQENTKKSQK NQRSQKKSDL VEKTQIKEFS HRICFSVEPV AECRRGYEVE 1561 QQQQRKIRFT CLQRHNRDAS RLLKESRQQP LQLDDYPVSF VESVKVPTAC VAY //