LOCUS CCD65402.1 495 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Serine/threonine-protein kinase
cst-1 37kDa subunit protein.
ACCESSION BX284606-951
PROTEIN_ID CCD65402.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="cst-1"
/locus_tag="CELE_F14H12.4"
/standard_name="F14H12.4a"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00017472"
intron_pos 17:2 (1/11)
intron_pos 44:2 (2/11)
intron_pos 105:0 (3/11)
intron_pos 157:0 (4/11)
intron_pos 283:0 (5/11)
intron_pos 314:0 (6/11)
intron_pos 344:1 (7/11)
intron_pos 371:1 (8/11)
intron_pos 425:1 (9/11)
intron_pos 447:0 (10/11)
intron_pos 476:2 (11/11)
BEGIN
1 MPPSTDSSRR NSEEGSSDGF KLDSSALNKP PEEVFDIVGK LGEGSYGSVH KAIHRESGHV
61 LAIKKVPVDT DLQEIIKEIS IMQQCKSKYV VKYYGSYFKH SDLWIVMEYC GAGSISDIMR
121 ARRKPLSEQE ISAVLRDTLK GLQYLHDLKK IHRDIKAGNI LLNTDGIAKL ADFGVAGQLT
181 DTMAKRNTVI GTPFWMAPEV IEEIGYDTKA DIWSLGITAI EMAEGRPPYS DIHPMRAIFM
241 IPTKPPPTFK KPEEWSSEFN DFIRSCLIKK PEERKTALRL CEHTFIKNAP GCDIMQLMIQ
301 DAQEKAILGQ APMAASSGND ATLLSEGMST MIDGGESTLV QHKDNYVTAQ SLRSQMESLR
361 IGGEIPKSAY SSSKNGNSPR VQPPGHTASA SDPSKNQPFA QDGTGPNFQL GTSESSYKDA
421 SYNMMNTEAE YENRFQRAVV DGDFEFLRNI TLDELIRRKE SLDSEMEEEI RELQRRYKTK
481 RQPILDVIEI KKRLQ
//