LOCUS CCD65284.4 3611 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Calponin-homology (CH) domain-containing protein protein. ACCESSION BX284606-2179 PROTEIN_ID CCD65284.4 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="fln-2" /locus_tag="CELE_C23F12.1" /standard_name="C23F12.1a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00016006" /db_xref="EnsemblGenomes-Tr:C23F12.1a" /db_xref="InterPro:IPR001298" /db_xref="InterPro:IPR001715" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR014756" /db_xref="InterPro:IPR017868" /db_xref="InterPro:IPR036872" /db_xref="UniProtKB/TrEMBL:D0VWL6" /db_xref="WormBase:WBGene00016006" intron_pos 28:0 (1/50) intron_pos 137:0 (2/50) intron_pos 241:0 (3/50) intron_pos 292:1 (4/50) intron_pos 319:1 (5/50) intron_pos 347:0 (6/50) intron_pos 368:1 (7/50) intron_pos 406:0 (8/50) intron_pos 481:0 (9/50) intron_pos 510:0 (10/50) intron_pos 540:0 (11/50) intron_pos 603:0 (12/50) intron_pos 647:1 (13/50) intron_pos 669:0 (14/50) intron_pos 705:0 (15/50) intron_pos 752:1 (16/50) intron_pos 801:1 (17/50) intron_pos 829:1 (18/50) intron_pos 879:1 (19/50) intron_pos 919:0 (20/50) intron_pos 954:2 (21/50) intron_pos 1046:1 (22/50) intron_pos 1070:1 (23/50) intron_pos 1100:2 (24/50) intron_pos 1126:1 (25/50) intron_pos 1158:1 (26/50) intron_pos 1217:0 (27/50) intron_pos 1283:2 (28/50) intron_pos 1314:2 (29/50) intron_pos 1858:1 (30/50) intron_pos 1943:1 (31/50) intron_pos 2004:1 (32/50) intron_pos 2072:0 (33/50) intron_pos 2114:1 (34/50) intron_pos 2188:1 (35/50) intron_pos 2244:1 (36/50) intron_pos 2281:1 (37/50) intron_pos 2369:1 (38/50) intron_pos 2529:1 (39/50) intron_pos 2556:1 (40/50) intron_pos 2597:1 (41/50) intron_pos 2834:1 (42/50) intron_pos 2883:1 (43/50) intron_pos 2958:1 (44/50) intron_pos 3017:1 (45/50) intron_pos 3155:1 (46/50) intron_pos 3194:2 (47/50) intron_pos 3243:2 (48/50) intron_pos 3462:2 (49/50) intron_pos 3518:0 (50/50) BEGIN 1 MGKQGEEARQ KWIDIQLHTF TNWINEQLQG NVIRDLTQDL SDGVNLIKLV EILQGRRYYG 61 KVYDQDPTEI QKLMNVQMAL DALREDGVKT VNIGSHDIVD GNEKLILGLI WCLVQRYQIA 121 CKTKIPPKKL VMAWIQSALP ELKLTNFRTN WNDGIALSAL LEYCQPGLCP EWRNLDPSEA 181 RENCHRALLL AERYLEVPPI ISSDHLSSPH LDELSCLTYL SYFITKGAPG YRATLKKVSM 241 LLPDCNVDDL EHSWSDGFLL AHLVEICGGR VPELERMRFD NLNDFVENVA IVLDAAADIG 301 VGSLIGADDI AEPQGEHLGT MALVAALCSV SLEQQVKYTD CYVNQQVNLD LAFTEGNEVR 361 IEELDVQVVG GNGQLYSNEA IKLRKSRTVQ GANLSLMPVE PGFLQVRIYC QGSELPASPI 421 SLQVHTQEET RSSSRAASRA HPENRNPPAS TSKYIERTIV SPVSDSRESG KIAQFSTETE 481 VDISHKSFAQ RRLHIIKQLE AQHVNHIAQT KSHHQQHTQQ QQHHQTVPTQ SSSIVQVVQP 541 IPPPPPTLAQ SSSNIPPPPP IPAVLEASAY REMPLTRSPD VGLVSFSGLT EPCSVGSIVE 601 VVINAHGDAV SGSVYVEAVS PSGNVHRCTV RHQDNSYMAT FTPQEVGLWR IGILYDGEHI 661 RGSPFACQVF DSGLVNVYGL DVGLVGQELN FSVNASQAGH GNLSVTVFRH GREIPLSIEE 721 QGSSKVHQVS FTPDGAGQYK IHVLFNRMEI KGSPFILDIA DASSVSVYGE NLRSASVGKT 781 ASFMVHAIGA EAKDISAHVT VPSGGKFPAK VVTLDDVTFQ IEWTPKEPGE HSVDVMLADQ 841 RVPDAPFACN VGAPDLVHVR NMPRRIQPSK LHTDHSFEID ASAAGSGNLE IMINGGRVPC 901 RVRELGSRQY MAIFTPTQSM THTIEMRFNG EHVSGSPWKL PVEDRGERRQ EMERTMSYYS 961 ELSGPGLVRA PVNRTAQFDI TGEGLELSDI QAKISGPDNR EYPIRIIPRS SGKYTAEYEI 1021 EQVGEHHLTV WIAGRKVDGS PLSVAGYATE KVRLEPLGGG VPKQPVQFYV DAVEAGKGQL 1081 EISVNQGKVP NNVQMQGAGR CLVTFIPQHA GTYVIDVTFN GEQVHGCPIK VEILPKQVGQ 1141 QIHANLTPTA VSTAISAGGT SLISGAFRET ARSPLSARSP TSPTLLQHAR QRSEETMLRS 1201 PQLLRESRKA DKPWQSSYAP SSSRNAFSQS PHRDWSASTV YDRVYNSNSD VERTLSPSDP 1261 SRNRNIRETT TVIHRTPSPT GLRSTQITET ITRTTHRSPS PPRGVSNTSF GSVRTQEFAE 1321 RIARSPSPTG YEREFVEKRT TYRSPSPART SSVAHSHISE VPLSPIQGMD TPFDHHERVK 1381 KVERMDPLAD EEEREQRRNQ LERDSKNTLG YTVAQYGDGE KRYFGDTLEK KDRPPSAGYY 1441 SSVQQRSTSP EYSTVYERYD RKSEKPDLPP RVEGHVSASY KGYEPVYSEV TTTRTTTTTE 1501 YENIDKKPNV PKKRATTPEG HVEPVNDNEE KDRQAFLRTQ SEKVFEPVDA PLRRSDEKES 1561 IYDLPPQERL HKYPEEPTIA LGEKANTSAI AAYTKGRQDD IDEVSRNASF PSAPTINYNE 1621 RSDEVSNYNR TKEDHYGVVG EYPTAPKIAY SDSKEAVIRE HYAQAKEDPY ATVGECPPAP 1681 EISLRSDKLN ETKNEYRRTT DSDQQDGKAG PPPPVIEISK AEQARRTEEY LRVKSEDDKI 1741 LAKHGFTRKP EPSIEIQEPV TEQIRDDVVE TAIAPEVPLR PVEELPHSPA PSSRSTPATT 1801 PKLSAKFRKD GKEGKPFDFG KSKFVCKHDV IKRGKEVEVK LEGIKLGKED QLRVVVLPPA 1861 NKAIPGANGG PPTEVDTKVK KSSSKYEISF KPTEVGTHKV FAYVNDMQHP LSPFAVRVYD 1921 ASEIIVGEIP NQSNLNDTVE FTVDAGRAGF GNLEMAIKDA DGVIIPSHVA QLESGSAKFL 1981 VTFTPATKGP HTVNITFNKE VLKNSPFEVN IVDAPLPAPV VLEPASGASA VASPSLSKKE 2041 LKEQEKEKKR EEKERAKREK EERATLKKEK KSKSHRFPAK TTVSKIPSLS RVGQPSSLVV 2101 EVSGHDQLEI RVLDSKKSEI GTDIVEIEPG HMQINFTPAQ VGDHEIDVRY GGVPVTGSPF 2161 TCRAYDPAKI KVGAIPKGLL DKPVYFTVDA SEAGVGNLEV AVCEGRVPSM AHALGHHKYD 2221 ISFVPKEDVD HTITVRFNNE PVPGSPFLCQ LVATAQATAT GAGLERIPVD EETEIQILTD 2281 EIDSAPEARV RDPQGNDLPV NVTRSRENET LHIATYVPKC VGNHLIDIFL QGEPIAGSPF 2341 TAKAYDARKT VLVPPANAVV GKPATFVIDA ARSGAGNMEI IVSVDNRNVP NFVQAEGQAR 2401 FKVSFTPQDA KDHTISVKFN GISVPGSPLI CSVSSAGSVP AAVVLPAAAV IGAETAVAAR 2461 ERIKHTPQHS SEQIKQTTTT VLQKTPEIRE TVEKTGLARE LNSAQIGQKK GFTIDNINKS 2521 SDCNVIITAP DGSMVPVSIQ KSSTSAYAEF TPTITGEHLV EIYLDHEIID EFVIKIKDER 2581 HILPPVCLAG QKYSFDVNSD DKNKVRVTIR EPSGRMLPVQ MEDLPDGGVR VSCRFKEVGI 2641 HSIDVFVDDQ PIGERKMQTV IDPLNGAQLV SEPKREIVGE QTELKILIDS GVESQVEVII 2701 EGPDREDNEV FVKKVSETLW SAVWTPKVEG EHELSILVAG EQIPGSPFPI HVLDPSAVRV 2761 IGLKNAPVGV EQQFSVDYTN SGASIASVEV RHGDQTIPIT VKKMKPGQLL CTFTPFVDGP 2821 HQVEVIIDGV PLSDGPYEVF ISHLGTVRAS GDALRKAQRA RTARFEVINV EQNRGELDVM 2881 VSDPKGGPLP VRCYKQQDDS YWVEFTPEHL GTHTIEVTFG DVPVPGSPFK TEVIDPKNVE 2941 IRGLSDQVLL RHATTINVDR RNAGNGELQV EITDPTGSPL RTEMLKSPGG EDRITFLPNQ 3001 TGPHKINVKV AGFQIPGYPQ TILVSEQEKP AVYGAAVDQS IKIGEPASLI FDPKKTNGGL 3061 KIHATGPDGQ KVHHNVMRRP NGTSEVVFYP EETGTYNVSI DFNNRPITGS PFTVNVVDPT 3121 KVIVNDLDMD RDGTLLLRLG HSNSFDVDAT AAGPGKLRAE VRDADSSLIG NGPVVEDMGQ 3181 GKYRVRFNPD QPGKYSIYLY WNELPVESAF PVRARSSAED LPTTSRAVRE PIPPPVTTTY 3241 HTREKSSGSN ADDEISRIMV RGDGLHRAVL KEHNEFIIDG SDINKEGRIT ATLLGSKADI 3301 PVRIQQLGHN VYKATYTPLT GGTYELHILW NGKHVKGSPF AVSADTSAHL ADLIDVDAST 3361 LKIGIINENI KTLIDTRRAG SGQLSALCMG PNKPAYCELY DHRDGTYALC VRPAEIGKHT 3421 LVIKYDDEHV KGSPFVVHVS LPPDPSKVRV YGPGVEHGIL SLFKSNFVVE TRGAGAGQLT 3481 VRVRGPKGAF NVEMQREKKN ERTIHCKYEP KEPGDYQVEV KWHGEHVPGS PFLVMIVDTE 3541 KELSRYLRGE APSPTPATPF IPPGWVAPPQ MYPMQPGQQR FLPPPGHFGP MGVPSPYGSV 3601 PPPTKHKGRN H //