LOCUS CCD64987.1 893 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans RBR-type E3 ubiquitin transferase protein. ACCESSION BX284606-1905 PROTEIN_ID CCD64987.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="C17H11.6" /locus_tag="CELE_C17H11.6" /standard_name="C17H11.6d" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00015926" /db_xref="EnsemblGenomes-Tr:C17H11.6d" /db_xref="GOA:B1Q249" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR002867" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR031127" /db_xref="UniProtKB/TrEMBL:B1Q249" /db_xref="WormBase:WBGene00015926" intron_pos 17:1 (1/16) intron_pos 99:2 (2/16) intron_pos 136:2 (3/16) intron_pos 193:0 (4/16) intron_pos 230:0 (5/16) intron_pos 257:2 (6/16) intron_pos 294:2 (7/16) intron_pos 367:1 (8/16) intron_pos 438:1 (9/16) intron_pos 506:1 (10/16) intron_pos 555:1 (11/16) intron_pos 604:1 (12/16) intron_pos 627:0 (13/16) intron_pos 687:1 (14/16) intron_pos 722:1 (15/16) intron_pos 783:2 (16/16) BEGIN 1 MSSNKCGLDP LEEEPSIESQ PILHTATPPV QHRRKISEEV SATRPCQIRA TPSKSTESSS 61 VANVGSIVAN HRPSRKCGSR LSLTSLLSFT GHSSFSRDRS RSGWSYSDDN AGHVAMTSVS 121 SSDVRSNVSG SISSKRYRGS DTGSGMDSEA GETCAEMLLS SRNQDDEEQS DEKQLSQSLP 181 DTPKTPSEVG KKGKGKMKEC PLCAAKMPGS AFPKLKGCQH RSCRACLRQY VELSITENRV 241 EVPCPECSSY LHPNDIKMLI GDIPTLIEKY EAFSLRRYLM TEADARWCPA PDCGFVFIAT 301 KCAACPQLKC QRPDCGTLFC YHCKREWHSN QTCDEARRPE KRKSRGLAFE EIMRTGFHQS 361 ADSTLKPGDV KACPRCKTYI VKMDDGSCNH MVCTMCNAEF CWLCLKEISD LHYLSPTGCT 421 FWGKKPWTRK KKLLWQLGTL IGAPVGIALI AGLSIPGIVF GVPVFVGRKV HQRFKYKSKT 481 KRRFLTATCV VGSLVVSPVM AVMAVGVGVP IMLAYVYGVV PLSLCRNGGC GLSSSDSSLA 541 LADIDEEQLY GTPGASAPVD LSQFMTDASK REDIVSIDPS ILSMPREMKT RYYPKGRRTS 601 LESGERVNYE EASVKAMAGS HHYDDKSVHT LCSGHEVTSL NDEQSSTKAL AGSVMDTKSM 661 SESMYRHMIL TKYAEKQHHQ ENDDDHDEQG GSDDQPSTSS AVHHIKGPKL SSSSIHRGCV 721 IERDDDGLLF TEEGAALLIN SPPAMRSSGS VNIDPIDLFK IRSWLDNMKQ MVATDAPQET 781 PYEPSTRPSS KLRRSGSGKS VHTVATFPVN LNTGNTVNRQ GLSNLSKPEI VQNMSNAPSE 841 AGITVAAPRS PTELEANGEN AGDDSVSTSS SSRSQKKKKR RFGIFSNWFN KTK //