LOCUS CCD64985.1 778 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans RBR-type E3 ubiquitin transferase protein. ACCESSION BX284606-1906 PROTEIN_ID CCD64985.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="C17H11.6" /locus_tag="CELE_C17H11.6" /standard_name="C17H11.6c" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00015926" /db_xref="GOA:Q86ME0" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR002867" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR031127" /db_xref="UniProtKB/TrEMBL:Q86ME0" /db_xref="WormBase:WBGene00015926" intron_pos 21:2 (1/14) intron_pos 78:0 (2/14) intron_pos 115:0 (3/14) intron_pos 142:2 (4/14) intron_pos 179:2 (5/14) intron_pos 252:1 (6/14) intron_pos 323:1 (7/14) intron_pos 391:1 (8/14) intron_pos 440:1 (9/14) intron_pos 489:1 (10/14) intron_pos 512:0 (11/14) intron_pos 572:1 (12/14) intron_pos 607:1 (13/14) intron_pos 668:2 (14/14) BEGIN 1 MTSVSSSDVR SNVSGSISSK RYRGSDTGSG MDSEAGETCA EMLLSSRNQD DEEQSDEKQL 61 SQSLPDTPKT PSEVGKKGKG KMKECPLCAA KMPGSAFPKL KGCQHRSCRA CLRQYVELSI 121 TENRVEVPCP ECSSYLHPND IKMLIGDIPT LIEKYEAFSL RRYLMTEADA RWCPAPDCGF 181 VFIATKCAAC PQLKCQRPDC GTLFCYHCKR EWHSNQTCDE ARRPEKRKSR GLAFEEIMRT 241 GFHQSADSTL KPGDVKACPR CKTYIVKMDD GSCNHMVCTM CNAEFCWLCL KEISDLHYLS 301 PTGCTFWGKK PWTRKKKLLW QLGTLIGAPV GIALIAGLSI PGIVFGVPVF VGRKVHQRFK 361 YKSKTKRRFL TATCVVGSLV VSPVMAVMAV GVGVPIMLAY VYGVVPLSLC RNGGCGLSSS 421 DSSLALADID EEQLYGTPGA SAPVDLSQFM TDASKREDIV SIDPSILSMP REMKTRYYPK 481 GRRTSLESGE RVNYEEASVK AMAGSHHYDD KSVHTLCSGH EVTSLNDEQS STKALAGSVM 541 DTKSMSESMY RHMILTKYAE KQHHQENDDD HDEQGGSDDQ PSTSSAVHHI KGPKLSSSSI 601 HRGCVIERDD DGLLFTEEGA ALLINSPPAM RSSGSVNIDP IDLFKIRSWL DNMKQMVATD 661 APQETPYEPS TRPSSKLRRS GSGKSVHTVA TFPVNLNTGN TVNRQGLSNL SKPEIVQNMS 721 NAPSEAGITV AAPRSPTELE ANGENAGDDS VSTSSSSRSQ KKKKRRFGIF SNWFNKTK //