LOCUS CCD64694.1 729 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans ShKT domain-containing protein protein. ACCESSION BX284602-1236 PROTEIN_ID CCD64694.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="skpo-2" /locus_tag="CELE_C16C8.2" /standard_name="C16C8.2" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00015841" /db_xref="EnsemblGenomes-Tr:C16C8.2" /db_xref="GOA:P91060" /db_xref="InterPro:IPR003582" /db_xref="InterPro:IPR010255" /db_xref="InterPro:IPR019791" /db_xref="InterPro:IPR037120" /db_xref="UniProtKB/TrEMBL:P91060" /db_xref="WormBase:WBGene00015841" intron_pos 20:1 (1/13) intron_pos 58:2 (2/13) intron_pos 170:0 (3/13) intron_pos 243:1 (4/13) intron_pos 266:0 (5/13) intron_pos 317:2 (6/13) intron_pos 356:0 (7/13) intron_pos 387:1 (8/13) intron_pos 418:2 (9/13) intron_pos 454:0 (10/13) intron_pos 619:1 (11/13) intron_pos 658:2 (12/13) intron_pos 711:2 (13/13) BEGIN 1 MRKNSHLLVL FLLAIGTFQL ANADEENEVD ASGDSPPSVE GEVVEEAKST AADDENVDKS 61 CKDRHDLCKF WSSIGECTSN KNWMEDHCPV SCDFCNGITT CIDRHRLCGF WATIRECETN 121 AVWMLSNCPK ACKACKGRSV TLGGTGPGGT FKEDDCTFIT TNEDTSIRKT LSIRDVRDSN 181 ANFNCAPTQE TPNCNRNLCY HLRYRSFDGT CNNLKKPMIG SAFTALMRLK NPMYDNGLNA 241 PTSSFLRSRP SARDASRLLL SSSTQIQHHS NALLMQWGQF IAHDLSKTTM LNNQECAACT 301 SNKGRCTSVF LSRSDPTFGR FMCLPVARST PVCGTGVSNF REQFNENTAF IDGSMIYGSS 361 DRDQFLFRQG AFLKTKLINN RVFPPVDKNN NVVAGDDRAN IFVGLASLHV LYLRQHNRIA 421 ATLQRVNPHW DQERVFHESR KIVGAMIQRI TFTEYLPKVL GVAFEERIGA YPGYDPNIDP 481 SVANEFTSCA FRFGHGMIQE FYPFLNEKFQ HVGGIPFNDG MFKSTHILNN GIDPLIRGLM 541 TLPAKMPQRL TPAVTERIFG NSDLGSINIQ RGRDHGVPPY TVWRKFCGLP EVKDFEGLKQ 601 VISNQVVIDN LKVVYKHVDA IDMYVGSLLE DPVKDALVGP TLSCIIGEQF KRTRNGDRLW 661 YENSKVFSPE QLLQIKKITM SRVLCDAGEH FPMVPRKAFS VFKPTAHNLV KCDEIPDLDY 721 NAWKEELAV //