LOCUS CCD64642.1 1091 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Copine family protein 1 protein.
ACCESSION BX284602-1501
PROTEIN_ID CCD64642.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="cpna-1"
/locus_tag="CELE_F31D5.3"
/standard_name="F31D5.3a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00006495"
/db_xref="EnsemblGenomes-Tr:F31D5.3a"
/db_xref="GOA:H2KYS8"
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR010734"
/db_xref="InterPro:IPR036465"
/db_xref="UniProtKB/Swiss-Prot:H2KYS8"
/db_xref="WormBase:WBGene00006495"
intron_pos 86:0 (1/10)
intron_pos 136:2 (2/10)
intron_pos 363:2 (3/10)
intron_pos 426:2 (4/10)
intron_pos 448:2 (5/10)
intron_pos 755:1 (6/10)
intron_pos 768:0 (7/10)
intron_pos 969:0 (8/10)
intron_pos 1015:0 (9/10)
intron_pos 1063:2 (10/10)
BEGIN
1 MVFDARLGYD PDEWEECPEP EHFLVFSGFT RYMLTFAAIA FVYYFFKLLD DKNKKESGEK
61 EEPQTSVESV LAKAGDKLHD VKEQVQQHIP ESAEELMREA DQYLKEQAHS VQNNVHQFAE
121 QAANKFPSLE VDLNLGHPID ATREKFDTVL SSVNNHLHET KNMDLSPTSR DSTQFEQIPS
181 IAPEESAFGH DFEHVPPHLK TAAEQYYAQQ HQPPPVPQHK IVQPVPISPT DQQLLHEFDI
241 YDAPAHQRMN QISEQLGQLG QKTPAQLQQL QHAQLAHQQL QQQGVFQPIQ QPSPLQIQTH
301 PQQPYFDFSQ LSPASQARYN QQQFVDISQL SPGAGALIAE QQASGAFQPV TKKLGREKRL
361 SEQDERALQD WEKEKALLEA DRLKKLLDHE VGGDSTDLDS SQKAYDHFAP ASHISYESHS
421 GAAQIQPMTP TAPKRADVPA PQVTSITNVR DSQLTDYDIS DFHAHDEPHY HTVLTPQQLQ
481 QNQQQHQQPS AIDRRRTTAD SDDYVKVSEP IYDYPPKGHE APVAEPKRIS PTEAAQLQEL
541 YQEYDLGLDL PGVAPIQGVA KPPVQQRTPL QIQQQVVQNV QNQPNMMARQ NSVPESPRTV
601 INVPISRKTD VPIQVQQQQN QFSYNVPIQV KDDPRNLATA DLFVQDAQEY VAHQQNQQDK
661 GSFVMEEEML SLHEPETGSN KKKLTPKNPS FEATSRQVRT NDVFERIEHD EHDDMTYAPE
721 IQSVEIPPDQ MSETSENMID YFDKVAAESE QQIQHLQEQQ NTLKKQQAPQ ILPAFGNRIS
781 SNSSLGSAGR SGSGVSSSDV YPYRHLRKQS SLLSVLGVTS MQEMLLAITS LDSLSEAMRK
841 AGLETTNLIF GIDYTASNKY QGEESFGGRS LHTIHPHVTN PYQQVISILG RTLAPFAGQG
901 RLGVYGFGDA KTGDWSVFNL KGEGGDCRSL DEVLNVYNTV TPTVALSGPT NFAPLIYQAM
961 EICQKSRDYH ILVIIADGQV TNERATRRAI VQACQHPLSI IVVGVGDGPW DMMRIFDESL
1021 PKRPWDNFHF VEFHEIVKKS TNMEDGDVKL AVQSLLEIPD QYRCICELGL LDRSIPPRGS
1081 EIRREMMHNP L
//