LOCUS CCD64607.1 2432 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Spectrin alpha chain protein. ACCESSION BX284606-670 PROTEIN_ID CCD64607.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="spc-1" /locus_tag="CELE_K10B3.10" /standard_name="K10B3.10b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00004951" /db_xref="EnsemblGenomes-Tr:K10B3.10b" /db_xref="GOA:Q21408" /db_xref="InterPro:IPR001452" /db_xref="InterPro:IPR002017" /db_xref="InterPro:IPR002048" /db_xref="InterPro:IPR011992" /db_xref="InterPro:IPR014837" /db_xref="InterPro:IPR018159" /db_xref="InterPro:IPR018247" /db_xref="InterPro:IPR035825" /db_xref="InterPro:IPR036028" /db_xref="UniProtKB/TrEMBL:Q21408" /db_xref="WormBase:WBGene00004951" intron_pos 68:2 (1/13) intron_pos 97:0 (2/13) intron_pos 139:0 (3/13) intron_pos 666:0 (4/13) intron_pos 1053:0 (5/13) intron_pos 1105:0 (6/13) intron_pos 1110:0 (7/13) intron_pos 1178:2 (8/13) intron_pos 2000:2 (9/13) intron_pos 2193:0 (10/13) intron_pos 2240:2 (11/13) intron_pos 2341:2 (12/13) intron_pos 2391:0 (13/13) BEGIN 1 MADSNDTHAP PEPVLEVPPP QEIRILETAD DIHQRRQEVL GHYSIFKDHS QTKRDRLEEA 61 RQFQYFKRDA DELNVWILEK LQTAQEENFR DPSNLQAKIQ KHEAFEAEVQ AHAKTIANLD 121 KTGNAMIQHN HFASEHIKKR LEELHALWDK LFFKLKDKGI KLQQALKLLH FIRQCDEILY 181 WIREKETYVT AEDMGMDLEH VEILQRKFDD FLKELGNHQY RINEINQAAD KLVEEGHSEH 241 DQIYKKRDDV NDAWHRLNTL AATRKEGLFG AHQVQRFNRD ADETLAWIGE KDLALSSDDY 301 GRDLNNVQAL QRKHEGTERD LAALEGKMLQ LEKEAHKLAE THPDRAEAIH QKNDDTKAAW 361 NALKEKAQHR KDGLERSFQL HRFLADYRDL ISWIGDMKAV IGADELAKDV AGAEALLESH 421 QEHKGEIDAR ADSFNQTASA GQKLVEMGIP ESPEVQEKLE KLDHEKSSLL GLWEERRILY 481 EQCMDLQLFY RDTEQAETWM NKQEAFLANT DLGDSLDSVE HLIKKHEDFE KSLAAQEEKI 541 NALDEFATKL IQGQHYAADD VAERRQALLD RRRRLLDRAR QRGNALKESY KRQTFDRDCD 601 EMVSWITEKL STARDDSYLD PTNIRGKLQK HINFEQELKA NENRLDDIRS TGEQIIDSGH 661 FAADHIGDRL RQVNNLWNEL VDATNKKGAK LREAGNEQQF NRNIEDVEAW LSELEGQVAS 721 EDYGKDLVSV QNLQKKIGLI ESDFNAHNDR VDGIKQLAQQ FQEEEHFNAP VIVRKQENLQ 781 QRYNALRDPL EKRKRKLGES HQGNQLFRDI EDELAWIREK EQVAGSTNRG RDLIGVQNLI 841 KKQQALIAEI ANHDSQIESV SSAANDMIQQ GHFLAPEIRD KLAQLRDNWR ILKSKAEKRR 901 TDLDDSLQAH QYLSDANEAD AWMSEKEPIV GSTDYGKDED SAEALLKKHR ALLSDLEAFK 961 GTIEDLRKQA SQCKYQEQPM GQLGRDCVLA LYDYQEKSPR EVSMKKGDVL TLLNASNRDW 1021 WKVEVNDRQG FVPAAYVKRI EPGTAQQHAQ QQVNSIGGKQ SEIEDKYQRL MMLGETRKRK 1081 LEEACKGYQL LREANDLAEW IKSRTNMAEE AVAAQQEIGT DLEQVEVLQK KFDDFKGDLK 1141 ANEVRLQEMN QIATALTSVG QTETAVRIRQ QIEDLNARWR ALEEQTEQRE QQLGSAHEVQ 1201 RFHRDVDETR DWIQEKDDAL DSEDFGRDLR SVQALQRKHE GVERDLAALG DKIKSLDEKA 1261 NRLRQSHPEA AEQIYDLQRE LNEQWNRLTS KANNRKEKLL DSYDYQRFLS DYRDLMQWIA 1321 SMNQLVSSQE LANDVTGAEA LLERHQEYRT EIDSRAATFQ AFDQFGNQLL NSHHYAAGDI 1381 ENRLQGVNEA RKGLEDAWVA RRNILDQCLE LQLFYRDCEQ ADTWMSAREA FLAQEDPSGD 1441 NVESLIKKHE DFDKAINTQE EKIKGLKLFA ESLIKNNHYD SPAVTRKRDQ ILDRWNGLKE 1501 ALIQKRFKLG ESQTLQQFSR DADEIENWMT EKFQIAQEEN YRDPTNIQQK HQKQQAFEAE 1561 LHANSDRIAA IIQAGNNLIE NAKCGGGEAA VSARLKALND QWDLLVKTTT EKSYRLKEAN 1621 KQKSFMAAVK DLEFWLGEVE ILLQSEDYGK DLASVENLLK KHSLLEADIV AHQDRVGEMN 1681 EQADSLLEND QFQGQQIAER RKLIADRYDG VKKMATDRRD KLSKALNVHQ FFRDIDDEES 1741 WIKEKKLLVS SDDYGRDLPG VQNLRRKHRR IDTELASHEP QVSLVKLKGE ELLRSAAEAG 1801 VGEDQIKKRM EDLEQSWGQI RDLTGNRHQR LDESEAFQAF LGDVEEEEAW MNEKQQILGS 1861 DNFGENMAGV QGLLKKHDTF QVDLELHKQR VADLINKGDT LIHNGNHHAP HIKQRCDQLR 1921 ARLIEIESMA EGRLAKLRDN SAYLQFMWKC DVVESWIAEK EQQVRSEDFG RDLSSVQILL 1981 TKQEAFDAGL NAFEHEGIQR ITELKDQLVS SEHQQSPAIE KRHTNVIQRW QNLLAHSEAR 2041 RQKLLKMQQQ FKQIEELYLA FAKKASTFNS WFENAEEDLT DPVRCNSLEE IRALRDAHGE 2101 FQRSLSSAEE DFRQLQDLDR RIKSFNVGPN PYTWFTMDAL EDTWRNLQRI IKEREQELAR 2161 EHQRQEENDK LRREFAKLAN AFHAWLTNTR QEMMEAGGTL EEQLDAVERK AKEIKANKGQ 2221 LRQIEEKGAM LERNLILDNR YTEHSTVGIA QAWDQLDQLA MRMQHNLEQQ IQARNQSGVS 2281 EEALREFSMM FKHFDKEKTG RLDHQQFKSC LRALGYDLPM VDEGQPEPEF QRILDIVDPN 2341 RDGYVTLQEY MAFMISKETE NIQSSEEIEM AFRALSKEFR PYVTAEELYA NLTPEQAEFC 2401 IRRMKPYMDA ISGRSIQGGL DYEQFVHALF QS //