LOCUS CCD64566.1 682 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Probable muscarinic acetylcholine receptor gar-1 protein. ACCESSION BX284606-1494 PROTEIN_ID CCD64566.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="gar-1" /locus_tag="CELE_C15B12.5" /standard_name="C15B12.5a" /note="Partially confirmed by transcript evidence" /db_xref="WormBase:WBGene00001517" intron_pos 25:0 (1/16) intron_pos 59:0 (2/16) intron_pos 89:1 (3/16) intron_pos 128:1 (4/16) intron_pos 174:2 (5/16) intron_pos 212:0 (6/16) intron_pos 244:0 (7/16) intron_pos 275:0 (8/16) intron_pos 299:2 (9/16) intron_pos 349:2 (10/16) intron_pos 420:0 (11/16) intron_pos 457:0 (12/16) intron_pos 502:2 (13/16) intron_pos 559:2 (14/16) intron_pos 605:2 (15/16) intron_pos 625:0 (16/16) BEGIN 1 MPNYTVPPDP ADTSWDSPYS IPVQIVVWII IIVLSLETII GNAMVVMAYR IERNISKQVS 61 NRYIVSLAIS DLIIGIEGFP FFTVYVLNGD RWPLGWVACQ TWLFLDYTLC LVSILTVLLI 121 TADRYLSVCH TAKYLKWQSP TKTQLLIVMS WLLPAIIFGI MIYGWQAMTG QSTSMSGAEC 181 SAPFLSNPYV NMGMYVAYYW TTLVAMLILY KGIHQAAKNL EKKAKAKERR HIALILSQRL 241 GTQVGVSLML QSKAEKEKAE EAQKDSGYTS NQAGGSLNTE NDQNLGVIEE ERSGFLSRRE 301 SNESYYPGPH PTAANSRRCS EMEKVSLLSE SDGVPSTRPA KSYGRLSLRS RYSASESITT 361 THENDEKEVE KADSLQKLFA DDELGSVLNF KEEKLKNTDS NNDSDTTSVI LQRSRKYKKN 421 KRPRSSRRSE HSTPRQIAKV KQAEGTAAQL IEESVPDDDQ TETIEVKRTD RWVVSMKKRI 481 ARALIRRRST TRPERGSSSN SDDSSSEVEG EEKPEVRNNG LKIPQLTVNN ENRGETSSQP 541 GRDRLAPPNK TDTFLSASGV SRKISTISTV ITREKVISSI FAPIAVFNRG RKQTKAEKRA 601 HKAFRTITFI VGFFAILWSP YYIMATVYGF CKGECIPSFL YTLSYYMCYL NSSGNPFAYA 661 LANRQFRSAF MRMFRGNFNK VA //