LOCUS CCD64548.1 414 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Lysosome-Related Organelle protein protein. ACCESSION BX284606-1433 PROTEIN_ID CCD64548.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="lro-1" /locus_tag="CELE_W05H9.1" /standard_name="W05H9.1a" /note="Confirmed by transcript evidence" /note="Product from WormBase gene class lro" /db_xref="EnsemblGenomes-Gn:WBGene00021048" /db_xref="EnsemblGenomes-Tr:W05H9.1a.1" /db_xref="EnsemblGenomes-Tr:W05H9.1a.2" /db_xref="GOA:Q23179" /db_xref="UniProtKB/TrEMBL:Q23179" /db_xref="WormBase:WBGene00021048" intron_pos 89:0 (1/6) intron_pos 133:0 (2/6) intron_pos 162:0 (3/6) intron_pos 241:0 (4/6) intron_pos 273:0 (5/6) intron_pos 334:2 (6/6) BEGIN 1 MRTFSVALLL VFFASSVSSV RYYSLADTFQ SVIDTEKALE EELRVNFENA RAARDKYREE 61 TQKKLNETLS KVSDAVKQRA DELEKEKQEK AEAKKKEAEA AIEKWKEVSQ QVGEFVESVK 121 EKKQAKEQEK QQKIDDFVKT FTDKIKQKQE EKEAQRQEQI EKWKQASEKL QQQREELKQQ 181 IDAAKQKLDE RRKQKLEELK TDLAQVKELV TAEVKRRVDE KNQRLGEQRE NHEALKQQIN 241 DKLADIEQQG KNVGDQAKTY EQKKDELSDL IQDLIGQGVK DKMANQISDK LQGQLDKAAL 301 KEVLNEKKVE QAGAPPPVNE IPVDIAPKAT ILDEITGKAA WETVTWVLLA LCILLSIALI 361 IIIVYQVKQR SVYERLDGNN QVYNPTSERA PLLPPPATPI TALPLAPAKE EQQF //