LOCUS       CCD64540.1               638 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Calponin-homology (CH) domain-containing
            protein protein.
ACCESSION   BX284606-1423
PROTEIN_ID  CCD64540.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="lrch-1"
                     /locus_tag="CELE_C14F11.2"
                     /standard_name="C14F11.2"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00015779"
                     /db_xref="EnsemblGenomes-Tr:C14F11.2"
                     /db_xref="InterPro:IPR001611"
                     /db_xref="InterPro:IPR001715"
                     /db_xref="InterPro:IPR003591"
                     /db_xref="InterPro:IPR032675"
                     /db_xref="InterPro:IPR036872"
                     /db_xref="UniProtKB/TrEMBL:Q17989"
                     /db_xref="WormBase:WBGene00015779"
     intron_pos      34:0 (1/12)
     intron_pos      81:1 (2/12)
     intron_pos      129:2 (3/12)
     intron_pos      173:0 (4/12)
     intron_pos      259:0 (5/12)
     intron_pos      310:2 (6/12)
     intron_pos      339:0 (7/12)
     intron_pos      414:1 (8/12)
     intron_pos      441:0 (9/12)
     intron_pos      506:1 (10/12)
     intron_pos      575:0 (11/12)
     intron_pos      600:0 (12/12)
BEGIN
        1 MAVSKHRSTS DHDSSEPSVS RSTTSTGSIH FGQTTSYTST LGGRFKEAEY SGRLLLHGLR
       61 LSEFPIEAFS NIALLDTVFL DLHDNRMSTL PADFSAFDCL ISCIASSNRF RTIPTCICSL
      121 EQLTFIDFSS NDISHLPDGL FDLPLKALIL ANNKITCIPE GIRRLAPTLA HLDFSKNDIR
      181 SLQSQLRYLT SLEVLKISRN RVEDFPAELC SSLKLRTLDL SHNNLSYLPA DFVKMTDLRY
      241 LQLECNPLRS PSMDIIEMGI VHIFKWLDGR TSACSTTSNG SNDVLLDRKR TTTASTTIVA
      301 EKHPPHNESR ATRNPPEPVK HVQHDHRPVN GNLNHRPKEL VESRTITSVH AKSHNVQIVQ
      361 NKISSVPSHL PTSNGGKENL RQSTPDEQNN NNNNNNDNEK SKLSSSSLSS PGMGKKPISK
      421 VAPMPKPTPR PIATNGNVQT KIGTVRRPNP IQSTTVTRST NTATVKKEIP VKTTKIASAI
      481 SRRSEEPAAQ KIASKPITSS VTNLNKSGLR APATGIANDV ESARKLMREK LGPTFSLNKG
      541 DISFSLQLSD GQELCKFINK LHPESISLAS STDSSIATTR SKMNVDRFLQ YCRKIGVPET
      601 TLCSQMDIIS KRNPQKVART VLTVAKLQQL QSSNSIQC
//