LOCUS CCD64327.1 1269 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Protein sax-3 protein.
ACCESSION BX284606-741
PROTEIN_ID CCD64327.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="sax-3"
/locus_tag="CELE_ZK377.2"
/standard_name="ZK377.2a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004729"
/db_xref="EnsemblGenomes-Tr:ZK377.2b"
/db_xref="WormBase:WBGene00004729"
intron_pos 25:1 (1/11)
intron_pos 144:0 (2/11)
intron_pos 231:0 (3/11)
intron_pos 285:2 (4/11)
intron_pos 414:1 (5/11)
intron_pos 486:2 (6/11)
intron_pos 751:1 (7/11)
intron_pos 847:1 (8/11)
intron_pos 1097:0 (9/11)
intron_pos 1142:0 (10/11)
intron_pos 1245:1 (11/11)
BEGIN
1 MFNRKTLLCT ILLVLQAVIR SFCEDASNLA PVIIEHPIDV VVSRGSPATL NCGAKPSTAK
61 ITWYKDGQPV ITNKEQVNSH RIVLDTGSLF LLKVNSGKNG KDSDAGAYYC VASNEHGEVK
121 SNEGSLKLAM LREDFRVRPR TVQALGGEMA VLECSPPRGF PEPVVSWRKD DKELRIQDMP
181 RYTLHSDGNL IIDPVDRSDS GTYQCVANNM VGERVSNPAR LSVFEKPKFE QEPKDMTVDV
241 GAAVLFDCRV TGDPQPQITW KRKNEPMPVT RAYIAKDNRG LRIERVQPSD EGEYVCYARN
301 PAGTLEASAH LRVQAPPSFQ TKPADQSVPA GGTATFECTL VGQPSPAYFW SKEGQQDLLF
361 PSYVSADGRT KVSPTGTLTI EEVRQVDEGA YVCAGMNSAG SSLSKAALKV TTKAVTGNTP
421 AKPPPTIEHG HQNQTLMVGS SAILPCQASG KPTPGISWLR DGLPIDITDS RISQHSTGSL
481 HIADLKKPDT GVYTCIAKNE DGESTWSASL TVEDHTSNAQ FVRMPDPSNF PSSPTQPIIV
541 NVTDTEVELH WNAPSTSGAG PITGYIIQYY SPDLGQTWFN IPDYVASTEY RIKGLKPSHS
601 YMFVIRAENE KGIGTPSVSS ALVTTSKPAA QVALSDKNKM DMAIAEKRLT SEQLIKLEEV
661 KTINSTAVRL FWKKRKLEEL IDGYYIKWRG PPRTNDNQYV NVTSPSTENY VVSNLMPFTN
721 YEFFVIPYHS GVHSIHGAPS NSMDVLTAEA PPSLPPEDVR IRMLNLTTLR ISWKAPKADG
781 INGILKGFQI VIVGQAPNNN RNITTNERAA SVTLFHLVTG MTYKIRVAAR SNGGVGVSHG
841 TSEVIMNQDT LEKHLAAQQE NESFLYGLIN KSHVPVIVIV AILIIFVVII IAYCYWRNSR
901 NSDGKDRSFI KINDGSVHMA SNNLWDVAQN PNQNPMYNTA GRMTMNNRNG QALYSLTPNA
961 QDFFNNCDDY SGTMHRPGSE HHYHYAQLTG GPGNAMSTFY GNQYHDDPSP YATTTLVLSN
1021 QQPAWLNDKM LRAPAMPTNP VPPEPPARYA DHTAGRRSRS SRASDGRGTL NGGLHHRTSG
1081 SQRSDSPPHT DVSYVQLHSS DGTGSSKERT GERRTPPNKT LMDFIPPPPS NPPPPGGHVY
1141 DTATRRQLNR GSTPREDTYD SVSDGAFARV DVNARPTSRN RNLGGRPLKG KRDDDSQRSS
1201 LMMDDDGGSS EADGENSEGD VPRGGVRKAV PRMGISASTL AHSCYGTNGT AQRFRSIPRN
1261 NGIVTQEQT
//