LOCUS CCD64305.1 769 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans IgGFc_binding domain-containing protein protein. ACCESSION BX284606-749 PROTEIN_ID CCD64305.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="C12D12.1" /locus_tag="CELE_C12D12.1" /standard_name="C12D12.1a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00015713" /db_xref="EnsemblGenomes-Tr:C12D12.1a" /db_xref="UniProtKB/TrEMBL:Q17921" /db_xref="WormBase:WBGene00015713" intron_pos 48:1 (1/12) intron_pos 87:0 (2/12) intron_pos 137:1 (3/12) intron_pos 173:0 (4/12) intron_pos 225:0 (5/12) intron_pos 253:1 (6/12) intron_pos 288:0 (7/12) intron_pos 328:2 (8/12) intron_pos 454:1 (9/12) intron_pos 488:0 (10/12) intron_pos 515:1 (11/12) intron_pos 636:1 (12/12) BEGIN 1 MDHTVLIALL LAFCSTASAV DSEGTDFVFA FVRNANPNIT NQILSATVLN QNAQDCKFTL 61 TYRPDYRKAT SPENITVTVS ANSAVEVPVL SWYGWNYANE NLQDDVFLTL TGFSTCPVTV 121 LANNYDNVTG QGDTYMVLPL TWGSTSLTFS LPPAVLSTDQ QYEQIYVLPT TPGVTKVSVF 181 EIGNAASVYT FNATFGNAPA AYIGARTPDA RPRTYHVMSD KNVLVVAGVT CAGADANSCD 241 HVAYMPHPPP SSDCYTYDYY DDDHVSYLPT TSQFFTDIPG TCSVGQNITR TLNDGVSYTI 301 TIKPQMESPL WSIKTTNANQ LAVAFHNGGS NIHIARYYDG TKFNSRGAFA ATSPSMTQFH 361 NLNTPFFTRN ANDTIEIYCT VLSCSSITID GVKIQITDTK VVQKVDDISY YIFVNTIANP 421 GYHQISLKQQ GSYAFFVYGK NKLYSYGYEG GANKPTVVLA PPTTPGPTFY PVTTVSTMSP 481 PTTVTVPTTP TPVPTTTNTP PANPTTATPT TVGTMTPSTG TTTVPVPTTT GSPTTQTTAP 541 VTKPTVPSST TQTAPPVTTP TSQPPVTTTS LLTTLTTPTV PVTTTVVPSS ATVPTTPPTT 601 VTVAATTTSK APVVTTSPTL APTSPTKLPT SPPSTVGTSP TAPANLTTPT TAPVNPTSST 661 TAPTAPVNPT SPTTAPTVPP VTTTTPTTTT STTTTTTTTT TTTQTTPTTP VVTTPSTITP 721 TTRPVTQPAS QPATQPATTP TTTIPTTTQF SSAVSVALPV VLTMFFALF //