LOCUS       CCD63972.1               547 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Vacuolar protein sorting-associated
            protein 45 protein.
ACCESSION   BX284606-212
PROTEIN_ID  CCD63972.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="vps-45"
                     /locus_tag="CELE_C44C1.4"
                     /standard_name="C44C1.4"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00016643"
                     /db_xref="EnsemblGenomes-Tr:C44C1.4a"
                     /db_xref="GOA:H2KYN0"
                     /db_xref="InterPro:IPR001619"
                     /db_xref="InterPro:IPR027482"
                     /db_xref="InterPro:IPR036045"
                     /db_xref="UniProtKB/TrEMBL:H2KYN0"
                     /db_xref="WormBase:WBGene00016643"
     intron_pos      32:0 (1/10)
     intron_pos      98:1 (2/10)
     intron_pos      120:0 (3/10)
     intron_pos      178:2 (4/10)
     intron_pos      344:0 (5/10)
     intron_pos      374:0 (6/10)
     intron_pos      405:0 (7/10)
     intron_pos      440:2 (8/10)
     intron_pos      481:2 (9/10)
     intron_pos      531:2 (10/10)
BEGIN
        1 MDLVQSSRKL IQDMIQLAGS QMKLLLMDGE TTPTVSCAFA QSEVMQKEVY IFDRIENKTS
       61 SENIKNLKCV VFVRPTPKNI ERLVKELQEP RFSQYYLYFT NTINKYDVKR LAEADKNETV
      121 REVQEVFLDG VPIRKDLFTL NLTHIFDSSF TLKEEAAERI KCGIIALLLQ LKKAPAVRYQ
      181 KSSPSCKKVA DDVAQFIRRE NGLFENSRAD TTLLIIERSQ DAVTPLLNQW TYEAMIHEML
      241 TLTNNRCTCT DQNIVLSELH DEFFARNITA NFGEIGQNIK TLISEFQEKK HINKNLESIQ
      301 DMKKFVEDYP QFKKISGTVS KHVSLVGELS NLVQKHNLLG VSEVEQAIVS DGDHGKCINL
      361 VRGLLKNTKT REVDIIRLVL LYALRFENAP GNELNSLISQ LRPQHPKIHQ TVSTLLKYGG
      421 LSRRPADLFG GESTIDITKR FIKGLKGVEN IYTQHSPYLK NMIESCQRGR LDNYPLLSNE
      481 CDRMDNIIVF IVGGATYEEA AYVRSLNEKR MQGYGGPAVV LAGSSMLNTK SFLEEFANVD
      541 KNTGAVH
//