LOCUS CCD63965.1 952 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Diacylglycerol kinase protein.
ACCESSION BX284606-217
PROTEIN_ID CCD63965.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="dgk-1"
/locus_tag="CELE_C09E10.2"
/standard_name="C09E10.2b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000958"
/db_xref="EnsemblGenomes-Tr:C09E10.2b"
/db_xref="GOA:Q17860"
/db_xref="InterPro:IPR000159"
/db_xref="InterPro:IPR000756"
/db_xref="InterPro:IPR001206"
/db_xref="InterPro:IPR001965"
/db_xref="InterPro:IPR002219"
/db_xref="InterPro:IPR016064"
/db_xref="InterPro:IPR017438"
/db_xref="InterPro:IPR020454"
/db_xref="InterPro:IPR029071"
/db_xref="InterPro:IPR037607"
/db_xref="UniProtKB/TrEMBL:Q17860"
/db_xref="WormBase:WBGene00000958"
intron_pos 53:1 (1/15)
intron_pos 114:1 (2/15)
intron_pos 144:0 (3/15)
intron_pos 188:0 (4/15)
intron_pos 241:1 (5/15)
intron_pos 281:0 (6/15)
intron_pos 322:1 (7/15)
intron_pos 437:0 (8/15)
intron_pos 486:1 (9/15)
intron_pos 623:0 (10/15)
intron_pos 734:0 (11/15)
intron_pos 776:0 (12/15)
intron_pos 825:0 (13/15)
intron_pos 853:0 (14/15)
intron_pos 886:0 (15/15)
BEGIN
1 MAAEGHNVDA NLVDMRPNHG HYFVKKTFGK PAYCHHCCDK IWGMLTTGYS CEMCNFVCHE
61 KCLRTVVSYC SSVALQLIKN PVAHTWSAPC LIKRKYCCVC RKRTDDALSV ECEVCEYYVH
121 VDCSDLAVSD CKEAATYVAN MESANTVQYH HMREGNLPKE SKCIVCRKTC FSTECLAGMR
181 CEWCGQTAHA VCYRQMDKEC DFGVLRKIML PPMCLTIPRT ELPMEQLLNI SSHDQPQSRK
241 VSSPSKIQAD DVSTSGEDVK EREDFEIIRV FDGNNSYRSQ ISRNIVVAKH VSVQQVRDAA
301 LRRFHINDTP ERYYITQVVG EVEEEILEDP VPLRNVKRPE GKRAQIFIRY YDDPDKDEVK
361 VYGGWLRKVP VTFCAISVSK DTVVQDLVTD ALYHFGLDGS CWNRYNLIEV SLDRGVAERT
421 CNPQENVLQL VRNLRKDSLR RYHVVRFYVQ EKEDPHDHAV FVGNLPVSLA QRQYERILLK
481 LLGAKEKPFT AIGPIYFEYG SLIITFNTPK AATAAVQKLQ SAIYEEKKLI VLCLPNVQPQ
541 MIPKDVEPLL VLVNVKSGGC QGTELIQSFR KLLNPFQVFD VLNGGPLVGL YVFRNIPKYK
601 ILACGGDGTI GWVLQCLDIA KQDAACFSPP CGIVPLGTGN DLARVLRWGG GYTGEENPMD
661 ILKDVIEADT VKLDRWAVVF HEEERNQPTS SGNQTEMNEQ TMNNPEDQTS MIIMNNYFGI
721 GIDADVCLKF HNKRDANPEK FQSRLFNKTQ YAKIGLQKMF FERTCKDLWK RIELEVDGRI
781 IELPNIEGIV VLNLLSWGSG ANPWGTSKEE GNFSKPTHYD GLLEVVGISD VSRLGLIQSK
841 LAAGIRIAQG GSIRITTHEE WPVQVDGEPH IQPPGTITIL KSALKAQMLK KAKKSRRGGA
901 TNATSLTHPH PETSESMSGP LGVPSTLGDP NHGKTTPDNT AADSDEEGDA FL
//