LOCUS CCD63964.1 950 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Diacylglycerol kinase protein.
ACCESSION BX284606-216
PROTEIN_ID CCD63964.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="dgk-1"
/locus_tag="CELE_C09E10.2"
/standard_name="C09E10.2a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000958"
/db_xref="EnsemblGenomes-Tr:C09E10.2a"
/db_xref="GOA:Q7JNZ1"
/db_xref="InterPro:IPR000159"
/db_xref="InterPro:IPR000756"
/db_xref="InterPro:IPR001206"
/db_xref="InterPro:IPR001965"
/db_xref="InterPro:IPR002219"
/db_xref="InterPro:IPR016064"
/db_xref="InterPro:IPR017438"
/db_xref="InterPro:IPR020454"
/db_xref="InterPro:IPR029071"
/db_xref="InterPro:IPR037607"
/db_xref="UniProtKB/TrEMBL:Q7JNZ1"
/db_xref="WormBase:WBGene00000958"
intron_pos 53:1 (1/15)
intron_pos 114:1 (2/15)
intron_pos 144:0 (3/15)
intron_pos 188:0 (4/15)
intron_pos 239:1 (5/15)
intron_pos 279:0 (6/15)
intron_pos 320:1 (7/15)
intron_pos 435:0 (8/15)
intron_pos 484:1 (9/15)
intron_pos 621:0 (10/15)
intron_pos 732:0 (11/15)
intron_pos 774:0 (12/15)
intron_pos 823:0 (13/15)
intron_pos 851:0 (14/15)
intron_pos 884:0 (15/15)
BEGIN
1 MAAEGHNVDA NLVDMRPNHG HYFVKKTFGK PAYCHHCCDK IWGMLTTGYS CEMCNFVCHE
61 KCLRTVVSYC SSVALQLIKN PVAHTWSAPC LIKRKYCCVC RKRTDDALSV ECEVCEYYVH
121 VDCSDLAVSD CKEAATYVAN MESANTVQYH HMREGNLPKE SKCIVCRKTC FSTECLAGMR
181 CEWCGQTAHA VCYRQMDKEC DFGVLRKIML PPMCLTIPRT ELPMEQLLNI SSHDQPQSLS
241 SPSKIQADDV STSGEDVKER EDFEIIRVFD GNNSYRSQIS RNIVVAKHVS VQQVRDAALR
301 RFHINDTPER YYITQVVGEV EEEILEDPVP LRNVKRPEGK RAQIFIRYYD DPDKDEVKVY
361 GGWLRKVPVT FCAISVSKDT VVQDLVTDAL YHFGLDGSCW NRYNLIEVSL DRGVAERTCN
421 PQENVLQLVR NLRKDSLRRY HVVRFYVQEK EDPHDHAVFV GNLPVSLAQR QYERILLKLL
481 GAKEKPFTAI GPIYFEYGSL IITFNTPKAA TAAVQKLQSA IYEEKKLIVL CLPNVQPQMI
541 PKDVEPLLVL VNVKSGGCQG TELIQSFRKL LNPFQVFDVL NGGPLVGLYV FRNIPKYKIL
601 ACGGDGTIGW VLQCLDIAKQ DAACFSPPCG IVPLGTGNDL ARVLRWGGGY TGEENPMDIL
661 KDVIEADTVK LDRWAVVFHE EERNQPTSSG NQTEMNEQTM NNPEDQTSMI IMNNYFGIGI
721 DADVCLKFHN KRDANPEKFQ SRLFNKTQYA KIGLQKMFFE RTCKDLWKRI ELEVDGRIIE
781 LPNIEGIVVL NLLSWGSGAN PWGTSKEEGN FSKPTHYDGL LEVVGISDVS RLGLIQSKLA
841 AGIRIAQGGS IRITTHEEWP VQVDGEPHIQ PPGTITILKS ALKAQMLKKA KKSRRGGATN
901 ATSLTHPHPE TSESMSGPLG VPSTLGDPNH GKTTPDNTAA DSDEEGDAFL
//