LOCUS CCD63806.1 523 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Serine/threonine-protein kinase pak-1 protein. ACCESSION BX284606-1366 PROTEIN_ID CCD63806.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="pak-1" /locus_tag="CELE_C09B8.7" /standard_name="C09B8.7c" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00003911" intron_pos 8:1 (1/9) intron_pos 44:0 (2/9) intron_pos 93:1 (3/9) intron_pos 162:0 (4/9) intron_pos 193:0 (5/9) intron_pos 382:1 (6/9) intron_pos 407:0 (7/9) intron_pos 448:0 (8/9) intron_pos 472:0 (9/9) BEGIN 1 MPNPFMKKNK DKKEASEKPV ISRPSNFEHT IHVGYDPKTG EFTGMPEAWA RLLTDSQISK 61 QEQQQNPQAV LDALKYYTQG ESSGQKWLQY DMNDAPSRTP SYGLKPQPYS TSSLPYHGNK 121 IQDPRKMNPM TTSTSSAGYN SKQGVPPTTF SVNENRSSMP PSYAPPPVPH GETPADIVPP 181 AIPDRPARTL SIYTKPKEEE EKIPDLSKGQ FGVQARGQKA KKKMTDAEVL TKLRTIVSIG 241 NPDRKYRKVD KIGSGASGSV YTAIEISTEA EVAIKQMNLK DQPKKELIIN EILVMRENKH 301 ANIVNYLDSY LVCDELWVVM EYLAGGSLTD VVTECQMEDG IIAAVCREVL QALEFLHSRH 361 VIHRDIKSDN ILLGMDGSVK LTDFGFCAQL SPEQRKRTTM VGTPYWMAPE VVTRKQYGPK 421 VDVWSLGIMA IEMVEGEPPY LNENPLRAIY LIATNGKPDF PGRDSMTLLF KDFVDSALEV 481 QVENRWSASQ LLTHPFLRCA KPLASLYYLI VAAKKSIAEA SNS //