LOCUS CCD63514.2 1338 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Autophagy-related protein 11 C-
terminal domain-containing protein protein.
ACCESSION BX284606-1703
PROTEIN_ID CCD63514.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="epg-7"
/locus_tag="CELE_T08A9.1"
/standard_name="T08A9.1"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00020334"
/db_xref="EnsemblGenomes-Tr:T08A9.1"
/db_xref="GOA:Q22342"
/db_xref="InterPro:IPR019460"
/db_xref="InterPro:IPR040040"
/db_xref="UniProtKB/TrEMBL:Q22342"
/db_xref="WormBase:WBGene00020334"
intron_pos 21:0 (1/13)
intron_pos 45:0 (2/13)
intron_pos 105:0 (3/13)
intron_pos 152:0 (4/13)
intron_pos 307:1 (5/13)
intron_pos 533:2 (6/13)
intron_pos 571:2 (7/13)
intron_pos 614:0 (8/13)
intron_pos 845:0 (9/13)
intron_pos 1131:2 (10/13)
intron_pos 1176:1 (11/13)
intron_pos 1259:2 (12/13)
intron_pos 1307:2 (13/13)
BEGIN
1 MIMYHIFYMD RGQAMVFDLN AETTTFNVLQ DMVSKEVGHR ISDLTFLDES GTTPDGNKSL
61 AEISTLGTET SPVYFFLKSG NERENHNGSD VTYIFQMIDD AVDQAQYVLK NQDPLKIYME
121 LPERAKNCRK VCAETLQMCA RLVQQHRFLH KGWLALINNL DISVSKMDKR GKKFKLVHSK
181 SEELIEKSDT LLLNYSDVVE QLRRIEVPSE IFVKPASLMT STSTPINPDE KCTLFDFIAM
241 ADPEASLDGL PDLVNEKIRQ LKEQNAISVY TRLQSVHETS KNQEYRDFKG INKRFSQLEF
301 SLKSCEERKN LVHKLVAQIL ETPKINDQNK LPPIIEEHRQ CMLTIFENFS EFRNMVRVFD
361 QSKQEILKNL RTRMSGFVVQ NYDRLRVVLN DIVQYEYKSN AVRIHMDLIG QIRDAPILYS
421 QSVSEIVRRR LLKTELEEWH TDHSTKCAQF STDEEKSREQ LGRKLKKHFL HALFPGLFDN
481 LPEFYVKAPL EKYDTDLPNI AKEYIKDLRD ALPELEPFLK VTLPNVASKL ATKGSKQHPS
541 FGQTRVESFL TDEPMRMARS HFNYSPAAWL SEDGGDSSPV PQPLMCRSPE NALRESQCRS
601 IPYVPSLQQL EGLDGPAPGS SAPISIPNST SSRINFKQSG RQQSSQDLHH VGSAVSSDTS
661 LLGHETPVKM EDTVLMTENK SELNLESNMN DSNDSIDSLL DVYEHIDYSA EDILLGLSDH
721 TVQLEDAVKR LSKMQNIVAN MTPRNEKLFK YLHQTAPRDF EIIIHDGDKL KNRVKELGES
781 VESLETELEN KKSTESNLEA KLAEMTVSHK KEIENTQAEC IKRMSVEFEL MTDSMSRQSK
841 EQIESKDREI EELKAKLEKQ NIAHEKALRN DPYSEEYKRT LTAEIRAELE KEFKQRIEVI
901 TKAVECKKDE AFARQEKTLE IENRVLSSEN ESKSKKLEAM NREKEQLESL IRQMPEGEVI
961 LDEFNALKES QPSAQIKDRF AAIRSRMERS TDGKCLDTNK VLLIDNILKV HKLQQLVNER
1021 EQYRDVIKSQ PGGDQVLQFL ENSTPTVPVD MEAYFNELTN FSGSFDEAGR KIAKIHEIAM
1081 ETIWLQALVR ANLGGPSLRD ISADIHKESY QKDVETVTSI AMMDIFIDHD RDEIKKLTRT
1141 LQIWLNTNVS SLRSGGTYAI EDSPKIRECA SKYKSMALKV STYQGMEESF YQPMAASTIQ
1201 VATSPSELEV ERSSQNTICT QTRLCLPAMN LLVSVQDIKI GCAVIVIWHQ AHNAYVIFCS
1261 SPNRYFVKES SIRRLGINTQ NAATRRNWII ARVVRSDSCS IKKPVNRYNL PIGTIVRRVE
1321 VEAVNMDFEG DFNHISIA
//