LOCUS       CCD63418.1               623 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Cadherin domain-containing protein protein.
ACCESSION   BX284606-3894
PROTEIN_ID  CCD63418.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="cdh-9"
                     /locus_tag="CELE_F59C12.1"
                     /standard_name="F59C12.1a"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00000401"
                     /db_xref="EnsemblGenomes-Tr:F59C12.1"
                     /db_xref="GOA:Q21035"
                     /db_xref="InterPro:IPR002126"
                     /db_xref="InterPro:IPR015919"
                     /db_xref="InterPro:IPR020894"
                     /db_xref="UniProtKB/TrEMBL:Q21035"
                     /db_xref="WormBase:WBGene00000401"
     intron_pos      42:1 (1/13)
     intron_pos      91:0 (2/13)
     intron_pos      113:0 (3/13)
     intron_pos      147:1 (4/13)
     intron_pos      251:0 (5/13)
     intron_pos      280:1 (6/13)
     intron_pos      310:0 (7/13)
     intron_pos      343:0 (8/13)
     intron_pos      363:0 (9/13)
     intron_pos      408:0 (10/13)
     intron_pos      467:2 (11/13)
     intron_pos      507:0 (12/13)
     intron_pos      581:2 (13/13)
BEGIN
        1 MIPYLGRSLL LLALLAQYSN TCLLKNGMSS VYLSAFEDLK PGNVIGTLPF ESQTSKETDV
       61 ELRVVKGNEL VDVKPGSHDL ILKKTLDRDE GVGKFEAVVE CRSSNLDTDF SQLNISVFVT
      121 VKDINDNAPV FDSAEYFVDI KEELPTGTIV FTDFEATDND QPGPNSFVQY TIVAGPHSHF
      181 LEIPDPFKPV ITIKDRINYE EIKKFSVEIE ARDQGEPSLA STVPLHVTIV DVNDLLPRFK
      241 HSHYTAKSQK NGVLVFEPEA ISAQDGDRLN ASLIFSLSGE LSEHFAIDND GSIRSITPNP
      301 PQRATFFVTA SEREDTERNS TAILSIRLQS SLAFQHNTYS TTISPTTPIG STVITVVANS
      361 ENNTPLTYSL LADTNTVSID EVSGNVVLRK KLEKPETLNV TASDGENVVS TALHLMTANS
      421 EESCRSPIKF EKFEYKMTIG KLNVLGVVNA TSRTGTKITY ILMNMNNDFE IDTNGVVKLL
      481 PKARLQCKVC ELIVVAKSGT QMAITKINVD NPAFVLHSTT ALTLLILIIL CLIFTMLAIL
      541 VCRKFCEKWK TGHRRSSICW LNGTTDTGIS ITTTTPNTTT RYVVNSDRDR CYESKSPGPK
      601 RSQGAHLVPV TVTSDGSTPT VYF
//