LOCUS CCD63418.1 623 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Cadherin domain-containing protein protein. ACCESSION BX284606-3894 PROTEIN_ID CCD63418.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="cdh-9" /locus_tag="CELE_F59C12.1" /standard_name="F59C12.1a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00000401" /db_xref="EnsemblGenomes-Tr:F59C12.1" /db_xref="GOA:Q21035" /db_xref="InterPro:IPR002126" /db_xref="InterPro:IPR015919" /db_xref="InterPro:IPR020894" /db_xref="UniProtKB/TrEMBL:Q21035" /db_xref="WormBase:WBGene00000401" intron_pos 42:1 (1/13) intron_pos 91:0 (2/13) intron_pos 113:0 (3/13) intron_pos 147:1 (4/13) intron_pos 251:0 (5/13) intron_pos 280:1 (6/13) intron_pos 310:0 (7/13) intron_pos 343:0 (8/13) intron_pos 363:0 (9/13) intron_pos 408:0 (10/13) intron_pos 467:2 (11/13) intron_pos 507:0 (12/13) intron_pos 581:2 (13/13) BEGIN 1 MIPYLGRSLL LLALLAQYSN TCLLKNGMSS VYLSAFEDLK PGNVIGTLPF ESQTSKETDV 61 ELRVVKGNEL VDVKPGSHDL ILKKTLDRDE GVGKFEAVVE CRSSNLDTDF SQLNISVFVT 121 VKDINDNAPV FDSAEYFVDI KEELPTGTIV FTDFEATDND QPGPNSFVQY TIVAGPHSHF 181 LEIPDPFKPV ITIKDRINYE EIKKFSVEIE ARDQGEPSLA STVPLHVTIV DVNDLLPRFK 241 HSHYTAKSQK NGVLVFEPEA ISAQDGDRLN ASLIFSLSGE LSEHFAIDND GSIRSITPNP 301 PQRATFFVTA SEREDTERNS TAILSIRLQS SLAFQHNTYS TTISPTTPIG STVITVVANS 361 ENNTPLTYSL LADTNTVSID EVSGNVVLRK KLEKPETLNV TASDGENVVS TALHLMTANS 421 EESCRSPIKF EKFEYKMTIG KLNVLGVVNA TSRTGTKITY ILMNMNNDFE IDTNGVVKLL 481 PKARLQCKVC ELIVVAKSGT QMAITKINVD NPAFVLHSTT ALTLLILIIL CLIFTMLAIL 541 VCRKFCEKWK TGHRRSSICW LNGTTDTGIS ITTTTPNTTT RYVVNSDRDR CYESKSPGPK 601 RSQGAHLVPV TVTSDGSTPT VYF //