LOCUS CCD63417.1 774 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans RNA polymerase II-associated factor 1 homolog protein. ACCESSION BX284606-3907 PROTEIN_ID CCD63417.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="tag-343" /locus_tag="CELE_F43B10.2" /standard_name="F43B10.2b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00018374" /db_xref="EnsemblGenomes-Tr:F43B10.2b" /db_xref="GOA:Q1XFY2" /db_xref="InterPro:IPR007133" /db_xref="UniProtKB/TrEMBL:Q1XFY2" /db_xref="WormBase:WBGene00018374" intron_pos 15:0 (1/15) intron_pos 51:2 (2/15) intron_pos 180:2 (3/15) intron_pos 218:1 (4/15) intron_pos 239:2 (5/15) intron_pos 316:2 (6/15) intron_pos 353:2 (7/15) intron_pos 416:2 (8/15) intron_pos 436:1 (9/15) intron_pos 495:0 (10/15) intron_pos 555:1 (11/15) intron_pos 591:0 (12/15) intron_pos 662:1 (13/15) intron_pos 677:1 (14/15) intron_pos 722:2 (15/15) BEGIN 1 MSVNQFDSFM EKVQETTPIT ISGLPFVDDG IYGVQESGQN SSRSSVYSSS KSTVIEVEQS 61 SRQQQVGRPT ESPPLPPPPL PLSNPPAKPT PPPPPPKPTI RPPPIPASPP PRPPASEPVG 121 IPLYSEKQHQ QQLRPTTAVS PPKPPSFAPP VPPAAALITD TSTTTNALTN AMFEQLKQSS 181 VRYDYVPYKS DHRSFTQNTQ PSPLPPAGVG DRRHSVPDDV RHYADETTPP PVLHDVADRY 241 STVAYMNHEP THNSTRVYSH SPTRSQVGVR DAHRLSRDDL RVVDAQSSPA DSQSEELRRM 301 YSGRSGNSVK PTGDVTARYV YDTANRNYTA YGERQARESY TSFTNNDRKR WSRSSEPRSE 361 TYINDPYYSG KDVVSGYGVI ETRRSRTSLH SHGSVPELIH SENKYDYQQL TDQQNREMER 421 KSRLDTERRS RRQSEGSRQI YIDRQISPER QRKDQYSGTY TNVNMQDNPQ YSIRREVPPP 481 VIPPKPQVVP HVQRVNGGEV YEDERSIYEA YSQIQHQRPQ PPIYGGQTLQ PIPPPPQPQP 541 IPQQYPPRYD QVPDQSISNH YIIPKSMRGS SSPILVRVQL SSKSPDSVRR QVQPQPQPQP 601 QQQQQYEAYG EADYVSRNLP LGVTEETTTT TTTTRNEEIE RKRRKKKEEE DRKKSEEIYV 661 PYNNGEQDYD RYNNYRDAEN ALIEEEYNTR HLKRTTEHPH RKQPPQKRDN TKDQHRGGKK 721 SSHHHSRETK HRIGWSPSNY RNPRDCFLNL LCFIIAPLVI ILILVVIIVF VIIQ //