LOCUS CCD63276.1 486 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Nuclear hormone receptor family member nhr-35 protein. ACCESSION BX284606-1004 PROTEIN_ID CCD63276.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="nhr-35" /locus_tag="CELE_C07A12.3" /standard_name="C07A12.3b" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00003628" intron_pos 15:1 (1/11) intron_pos 68:1 (2/11) intron_pos 101:2 (3/11) intron_pos 168:0 (4/11) intron_pos 211:0 (5/11) intron_pos 258:2 (6/11) intron_pos 300:1 (7/11) intron_pos 351:0 (8/11) intron_pos 391:1 (9/11) intron_pos 429:2 (10/11) intron_pos 455:2 (11/11) BEGIN 1 MLGTYNGDSK AETDGKDNSI CHICSDVATG RHYGAIACNG CKGFFRRTVR RNYEYHCRFE 61 SKCEIDKHNR AVCRYCRFMK CISSGMRDDQ VQSERDVIGK REKKDNMKTY CQDPTPRTSP 121 ELTMSPVEDE YDQLLESLLK SEMTIQSLRD TVITQTGNVE YTTKSKNRLS HTDRTATLND 181 VLKSMHSQLL LVIEWAKTLP EFKQLSGADQ AVLLKNFAGQ HVTLCVAYRS VGANDALKLL 241 NDLYIPRASK TTPHLKEYVD GFYLRDCEKV MDQLVEPMRF LKLDNKEFVA LKACVLFNPV 301 APGLSNHAVN LVLNARRKIF AAFEKYVRVN KPLETTRVGD LTFFILTPLS VLSKSISEDI 361 MFTKVSGVAR IDVLMEELIL AETDYGEDRQ DQTPCSIMND TPSGSQDMCS PCPEDLLRTS 421 TSSNSPTNSS LTAGLLLKTD DAMMSGIGTQ YTTPQPHTPQ FADSSHLNLP YAPFTSSYNQ 481 YPNTYS //