LOCUS CCD63270.1 2476 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans E3 ubiquitin-protein ligase RING2
homolog spat-3 protein.
ACCESSION BX284606-1021
PROTEIN_ID CCD63270.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="spat-3"
/locus_tag="CELE_T13H2.5"
/standard_name="T13H2.5a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00020496"
/db_xref="EnsemblGenomes-Tr:T13H2.5a"
/db_xref="GOA:H2KYH3"
/db_xref="InterPro:IPR001841"
/db_xref="InterPro:IPR013083"
/db_xref="InterPro:IPR017907"
/db_xref="UniProtKB/TrEMBL:H2KYH3"
/db_xref="WormBase:WBGene00020496"
intron_pos 19:0 (1/18)
intron_pos 136:0 (2/18)
intron_pos 177:0 (3/18)
intron_pos 496:1 (4/18)
intron_pos 701:1 (5/18)
intron_pos 824:1 (6/18)
intron_pos 1061:1 (7/18)
intron_pos 1143:0 (8/18)
intron_pos 1193:0 (9/18)
intron_pos 1320:0 (10/18)
intron_pos 1656:1 (11/18)
intron_pos 1708:1 (12/18)
intron_pos 1766:0 (13/18)
intron_pos 1784:0 (14/18)
intron_pos 1940:2 (15/18)
intron_pos 2355:0 (16/18)
intron_pos 2391:1 (17/18)
intron_pos 2416:0 (18/18)
BEGIN
1 MDDSPGPSTS KSARDKAENA EENTSDSSSD SEVSSASEKS EESRPSSEKK KVITRVIPVR
61 PPTRDKGHRV NLLESGNESE TKSLYQRAKE GIPSYKGKPE IKLPTTSEQY YDLEEVLMNP
121 ARMEGRELTL NAYDAVRNKY NVLPGKSVCE ADLQKVIGSF SCDVCQELIQ GSIMTKKCGH
181 RFCDQCILVA FMRSGNTCPT CRQNLGSKRE LQQDPRFDQL IYQVVESRSI VGRMMAENRE
241 HEKDVYFGRK GYIEGGSDWN KRYGIDPNSK LKAPRPLKSA GRKKIRWFHE SDEDGSVRKV
301 MESKKGAPKE DDTNYLENDK EGTSVAAEKE VLEEGEMDFP IEIKSSDEEQ TDLDDEEESM
361 LDSDFEISDN EDVSKPSCST SKKTTNRSRD SSESDNDSRD NELQKKKRKM KRKNVPKTDG
421 SDVSNESFDE DASGEVVATK LIKESKKKPC GRPKKKFAPE LIEGDIPTPS EDSLTSSDEE
481 RDDNAADPYA FVFQKEFNRD PRRDGHPEKD KLYNFDFMID MNHQVDRKFE KDGEIHVISD
541 DSNSEHESDE AEDRESSIDS EHEKEISKFL SHRQPLPNPT SVDDDCQVIT VVKKDVKQSA
601 ITSKPGETSP DSSSKIEEKP DKVSEEVSDD EMTPEHITAD KGTDTFLNNI MEHDDEMYGG
661 YLFRPGDTGI SRPKVQRAPG TNRLSMNVCP EAVYVVYPQP VLKEGKKKLV IPPEDYEISS
721 DETVTLSDSE ETSPSAEMEQ SETSEAGPST IIKTSGTERE TQGSSSPSEP STSRDRKMHK
781 RKLDTRRRKL ADDSDLSDFD VFSIDGNELV ATGKPIIKHK VFYDSANRMP SKSNLDFTGR
841 RNAREIPMEE ISRLAEEQVA HEEYKIHRRR QVVLEAVEAA SKKLNVYVDT TEEEEIEEEE
901 TPEEEVVKVA SPTAPIATEN PTTSTAPFEE GVAMKETPIE EIFFDPDEPC SSAQAAQREL
961 IIERVGKEQQ IIEDSLEQNR KPSSKTVKES ESREAQEPRI EKDEMESEQQ KKDADNPTVE
1021 VDKESEASSS ESDKSDFEDE TLDAQSKTVK ISLKHEKTVS DEEIEDFDTK FGEFVATADA
1081 KMIKRTIGEY VSTEFLKLVA QQPAVTDEVL ALGFCVRNTD QEFSTIKETG KRTNKNPDDV
1141 RLESMVKNFR ESFAAKHRPV PRKLPTNIER MYIERAHMVK YKHVVDMEPL HMKILIALQK
1201 QQIAATCANL SQPVTVTPEE HAEQVQLLHN LQNPSILRPL LNNPQFALTL HKAQQQAIQQ
1261 QRAQQKAQTQ KELAARQAEQ ARVEELARKR IAQEDAEKAL RQKGEQMSNV SGIPVSSDQN
1321 AQSSNAQQTG LIENQTTTTN SDSLTRPNTL ADNSHLGESQ QIPVIESIQS STSEALKESE
1381 NYKDMPILTP ASTVSSKSSA PATRRPSRPC SSYDRPSSPS VVIRERLGSD GALINRPPNR
1441 CNIDKSRSRS PISRAPVETV RINDHGQNET ILAGNITHTV ETTILEEGTS IGQDSTIRYD
1501 GECSTTQYID KTIDLDNSKN GTNVDEEQSN VLKLRENDLN REMLRYANRY HPSTMLAMGN
1561 LSINERHNKV QQVLASQELQ DLIARHTSGA VSQTQVEVVG GEGVCAGTSD AIGETDEDDD
1621 VEEEPEFTVD QLELAKKILK QRQGLESSED SDSDEDMVYD NVDGSVIRRA PHKKRETRKK
1681 KNIFVPNIPP KIRRKYVDKK IEMERAKYRA RIKSQKMASI RIAVPQKPTQ QFATPQQPVR
1741 GPGKHSAAAA ARATPKPKKA KMSNVQMSIV QPPLPLHQLQ GHMSAPTKIT AVPNVAAGFH
1801 QNQQQLYSDM AQAPQSTPIR TTPQPGTGSA PQAQTPQSHL AQLGQFVNGA NQQQAPQQQG
1861 MYTAAQLQAM QAAVAQTAQA AQAAYAAEAA YQAQVAQQAR AAPPQQLVQR QVPVGHPGQV
1921 NVPMPAQMLN QGNPQMAVNP AQAQMMDERR KMEEVNAVYH LMQSRGQFPP TNQELFQVQF
1981 AQAQADLRSA AAQAAQAAQA QAQMTNMRAQ AEAVARQQAM MKQEQARAQA AAKEAARLKA
2041 ETEAAKAKVQ AEAEARRKAE QEMRVRQAQA AQTQAAQAQA QSQAHAQNQA QTQAIVEIQR
2101 MIQSGQPLSM QQMQQLQQMS QVQMQHAQQV QQMQQMQMQQ LQMQQFAARM QQGTPKPAVS
2161 QQAVQQGMPA GIQGMPTGMG MQQLQGLGMP GMQLPQQAGQ SQQTSQAQQQ QLFMQLQLQQ
2221 QQLMQHQLQQ QLQMQQHQQH QQQQQQIQMQ QQQQLAQQGL VPNVSSAWLQ QQAQLAQQQQ
2281 QVVQQNLLMR VPSAQTPVAP RAPTVAPQSV VQQAPAPATP IAISVATTQV TRPETVEPFR
2341 SISSGTGTGT ERINNNVELE LWPTNGYSEK KRKEGSQASP IFGASAGDST FYHVACLIRS
2401 RSACNADDVG SLWVLRLEDQ TLLQFQLQQT LAEAQRFVGK QHLVIFYDDV MSGEVQQSKE
2461 YVINREFKPS NRQIPN
//