LOCUS CCD62874.1 628 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Major facilitator superfamily ( MFS) profile domain-containing protein protein. ACCESSION BX284606-230 PROTEIN_ID CCD62874.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="vpat-1" /locus_tag="CELE_F55A4.8" /standard_name="F55A4.8a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00018860" /db_xref="EnsemblGenomes-Tr:F55A4.8a" /db_xref="GOA:H2KYF2" /db_xref="InterPro:IPR011701" /db_xref="InterPro:IPR020846" /db_xref="InterPro:IPR036259" /db_xref="UniProtKB/TrEMBL:H2KYF2" /db_xref="WormBase:WBGene00018860" intron_pos 25:0 (1/16) intron_pos 65:0 (2/16) intron_pos 89:2 (3/16) intron_pos 118:0 (4/16) intron_pos 146:2 (5/16) intron_pos 199:2 (6/16) intron_pos 213:0 (7/16) intron_pos 286:0 (8/16) intron_pos 310:2 (9/16) intron_pos 360:0 (10/16) intron_pos 413:1 (11/16) intron_pos 460:0 (12/16) intron_pos 525:2 (13/16) intron_pos 557:2 (14/16) intron_pos 582:2 (15/16) intron_pos 614:0 (16/16) BEGIN 1 MSGTDMPYTF DQDPLDMDTS SEVYYPTLVG YGGTSNERSG STSAGKKEKK VVSINTADTR 61 KSTQHLKTRN HSTSNAIDNE LTPLLHPSIS LPTVVGYDGF NEDYQAGHNP PTTTRSEIGP 121 REFARKKRRR PRFNTLQGLN RKKKPRPFII SPFMPISTQI SVDGPRSSAL SAKINYESTA 181 ERLSIKESEG SESDSDEESA ISDEEQAVPF LKSALHTVSA LSSRQLLSIS MLSLANLCST 241 IAFSCIAPFY PAEAKLKNLS ETQTGIVFGI FEFTMFIISP LFGKYIIFIG ARTMFIVGIA 301 VTGVTAILFG FLNFLPSGNT FFWFSVLVRI LEAVGDAAFV TSSFAIAAKS FPKNVAFVVG 361 ILETFAGLGY TAGPVIGGFF YDIGGFQLPF LVLGIVLLVA SVLAFFLIEN TKDDESNPED 421 KGMLEILRLP QIWLPIFSVV SCAISLSFLD PTLSNHLESF KLTPTEIGLM FLLCGGFYTV 481 MCPVFGAIMD RLHNGENLLL FGSIATLLSM FFIGPTPLLN GYVEKDLWVI GISLAVLGLA 541 ASALYIPCFQ MCLDEVKDKG FDDNFHTYGC VSGIFQAAFG FGSFIGPTFG SVVVERVGFR 601 WTTTMIAFLH IILSTVVLLG IIIKKCRR //