LOCUS CCD62873.1 633 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans ZP domain-containing protein protein. ACCESSION BX284606-222 PROTEIN_ID CCD62873.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="cutl-21" /locus_tag="CELE_F55A4.10" /standard_name="F55A4.10" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00018861" /db_xref="EnsemblGenomes-Tr:F55A4.10" /db_xref="GOA:Q95Q52" /db_xref="UniProtKB/TrEMBL:Q95Q52" /db_xref="WormBase:WBGene00018861" intron_pos 28:1 (1/15) intron_pos 63:1 (2/15) intron_pos 93:0 (3/15) intron_pos 145:2 (4/15) intron_pos 182:0 (5/15) intron_pos 200:1 (6/15) intron_pos 282:1 (7/15) intron_pos 355:2 (8/15) intron_pos 383:2 (9/15) intron_pos 401:0 (10/15) intron_pos 433:2 (11/15) intron_pos 479:0 (12/15) intron_pos 520:1 (13/15) intron_pos 555:1 (14/15) intron_pos 610:0 (15/15) BEGIN 1 MRSIILIILV CSISFCSGQV IIAKNTQVTP RCGSQLISIE VNFDPTQLPG GKFTDWIIVG 61 VSGRPECRLR GNGETKYIIE IAVFNDPCLT QIPARNVFQN RIRIGKNPVV ILEEDQSVTV 121 KCIYGLPTVE TMTLPIINSN FNIDNFGHPE AEIRTTSSNS SDLSSSISQS RASLSVDEST 181 KESMHQSFEN SESIDSNQRA TQVRDSSNFG GTPNLLPTQG FNSEQFAATT LRNGQNMNGN 241 WEANRNTNAP NNFQVETGND EAINGNSMGS VPGMGNSFNN FDTLNTGQSS KKRSFSMIFI 301 TAVILIVLVF LALLGFCLMF LRRKLASRNR RLLVDRVSDR TWPANTSNDE YGTTSPPPVA 361 AKPKHFDNRL ESHNTSVGRH LFRSPAARNF PDLSIVIKSD STNENDKTSG RRRPSVKISK 421 KKTPAPNANL PLKSNLEEFV SKTYALGEYN NLASPAYAYT SEIHDEREVD VGNDVRYEKP 481 YEKRSASKPR APRVEDGAVS SFRSITEIVH AAETATTSQD QKGNGDSSEM QNILMDCVLS 541 IRGFGYRKLT EQEIIRWKNL IQQDSHIREL LVSSKSSAEI ENIFEHEEYK NMFTSSKWHE 601 IALCVHRALT NSLDRSNSRS ELQLFVGNVH TDW //