LOCUS CCD62848.1 912 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans DnaJ homolog dnj-5 protein. ACCESSION BX284602-2443 PROTEIN_ID CCD62848.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="dnj-5" /locus_tag="CELE_C04A2.7" /standard_name="C04A2.7c" /note="Partially confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00001023" /db_xref="EnsemblGenomes-Tr:C04A2.7a.1" /db_xref="EnsemblGenomes-Tr:C04A2.7a.2" /db_xref="WormBase:WBGene00001023" intron_pos 36:1 (1/14) intron_pos 104:0 (2/14) intron_pos 160:0 (3/14) intron_pos 208:0 (4/14) intron_pos 278:1 (5/14) intron_pos 357:0 (6/14) intron_pos 479:1 (7/14) intron_pos 540:1 (8/14) intron_pos 691:0 (9/14) intron_pos 730:0 (10/14) intron_pos 786:0 (11/14) intron_pos 820:0 (12/14) intron_pos 844:0 (13/14) intron_pos 878:1 (14/14) BEGIN 1 MSSFDDPEKH FLGNLLEDDP GSSVTSATSP FAGINGSTST ALTSQVPTVG PVMCPTELSM 61 SNAWPEPPPP YSPRHESWGL PSNANTTLLG SSSLTSSNWF PFTDQKETSS NEILSSLNLA 121 AGSSSPALPS TPSRVPHHPS SQVHHFHHNL HHHTHTHNVV QNHYFGAPPP GLESFGPTRT 181 SSTSSSQIYD AIPNPSWNYT GLSNINADSN VLFSDWKNKN SSQTSPVSTV VSESSISSNL 241 ETRPVHPPLS PSEVVEIAKE KKNVSKSYAE HLSKSTAGTQ KKGAPIGAEK KQKQELAKKM 301 SNQLPIESIA TRIVVKGQPH SAPVVSRMPF SYRDVAARSD HTSSSNHPNH QPDELQRKEL 361 SSADLKLNDS KAVRTKNNDH RETGKTRNTI DPTDFNKKNR VDNEFQKINN RKNKKEKAVT 421 EVAAPVIFEG VHPVDSSSRY DVLKNLESPN QSYHEKKSAN GRPPLIQKIF SRSSSPADDI 481 IDTEEEDPHR VRSSSTHVHQ NGNGQVKKDQ RKRVAQVNQR RRKGRKEEPS WLQNAFSTFV 541 DVLFFVWGYA CFGLQWTLLL IVEVCQKIAD IFVTFGKSLW AGTCKGLRNV ILAFVYLCFF 601 VVFAIKSVVV RLLTFINMIG AEESDETVEE QDWGCKKEIP IATNATEFAD RLSRETIRDA 661 YSVFGLRSDC SDDDIKRNYK RLAALVSPDK CTIDAADQVY ELVDVAFSAI GYKDSRSEYT 721 LENLKNNEVH EQLISVWNDM TKAVEEARNT IFCDCENTHF RVATSISPSQ ARSCKRCGVK 781 HPAKQNDIWV EKRHLGLTST YYTCTDNVVY DITSWATCKS QRAMLKNMRA HTHNVQYRLL 841 SPMNSDFDAQ SQYYNSSYPS SSTDARFLSD LQEEYSTLLR QRSLAQISFK NCEPREEDRS 901 RRAANRRQKR WR //