LOCUS       CCD62848.1               912 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans DnaJ homolog dnj-5 protein.
ACCESSION   BX284602-2443
PROTEIN_ID  CCD62848.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 15279421)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 15279421)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 15279421)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="II"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="dnj-5"
                     /locus_tag="CELE_C04A2.7"
                     /standard_name="C04A2.7c"
                     /note="Partially confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00001023"
                     /db_xref="EnsemblGenomes-Tr:C04A2.7a.1"
                     /db_xref="EnsemblGenomes-Tr:C04A2.7a.2"
                     /db_xref="WormBase:WBGene00001023"
     intron_pos      36:1 (1/14)
     intron_pos      104:0 (2/14)
     intron_pos      160:0 (3/14)
     intron_pos      208:0 (4/14)
     intron_pos      278:1 (5/14)
     intron_pos      357:0 (6/14)
     intron_pos      479:1 (7/14)
     intron_pos      540:1 (8/14)
     intron_pos      691:0 (9/14)
     intron_pos      730:0 (10/14)
     intron_pos      786:0 (11/14)
     intron_pos      820:0 (12/14)
     intron_pos      844:0 (13/14)
     intron_pos      878:1 (14/14)
BEGIN
        1 MSSFDDPEKH FLGNLLEDDP GSSVTSATSP FAGINGSTST ALTSQVPTVG PVMCPTELSM
       61 SNAWPEPPPP YSPRHESWGL PSNANTTLLG SSSLTSSNWF PFTDQKETSS NEILSSLNLA
      121 AGSSSPALPS TPSRVPHHPS SQVHHFHHNL HHHTHTHNVV QNHYFGAPPP GLESFGPTRT
      181 SSTSSSQIYD AIPNPSWNYT GLSNINADSN VLFSDWKNKN SSQTSPVSTV VSESSISSNL
      241 ETRPVHPPLS PSEVVEIAKE KKNVSKSYAE HLSKSTAGTQ KKGAPIGAEK KQKQELAKKM
      301 SNQLPIESIA TRIVVKGQPH SAPVVSRMPF SYRDVAARSD HTSSSNHPNH QPDELQRKEL
      361 SSADLKLNDS KAVRTKNNDH RETGKTRNTI DPTDFNKKNR VDNEFQKINN RKNKKEKAVT
      421 EVAAPVIFEG VHPVDSSSRY DVLKNLESPN QSYHEKKSAN GRPPLIQKIF SRSSSPADDI
      481 IDTEEEDPHR VRSSSTHVHQ NGNGQVKKDQ RKRVAQVNQR RRKGRKEEPS WLQNAFSTFV
      541 DVLFFVWGYA CFGLQWTLLL IVEVCQKIAD IFVTFGKSLW AGTCKGLRNV ILAFVYLCFF
      601 VVFAIKSVVV RLLTFINMIG AEESDETVEE QDWGCKKEIP IATNATEFAD RLSRETIRDA
      661 YSVFGLRSDC SDDDIKRNYK RLAALVSPDK CTIDAADQVY ELVDVAFSAI GYKDSRSEYT
      721 LENLKNNEVH EQLISVWNDM TKAVEEARNT IFCDCENTHF RVATSISPSQ ARSCKRCGVK
      781 HPAKQNDIWV EKRHLGLTST YYTCTDNVVY DITSWATCKS QRAMLKNMRA HTHNVQYRLL
      841 SPMNSDFDAQ SQYYNSSYPS SSTDARFLSD LQEEYSTLLR QRSLAQISFK NCEPREEDRS
      901 RRAANRRQKR WR
//