LOCUS CCD62844.2 985 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Egg-laying defective protein 27 protein. ACCESSION BX284602-2430 PROTEIN_ID CCD62844.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="egl-27" /locus_tag="CELE_C04A2.3" /standard_name="C04A2.3b" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00001194" intron_pos 17:0 (1/9) intron_pos 38:2 (2/9) intron_pos 93:0 (3/9) intron_pos 153:0 (4/9) intron_pos 226:0 (5/9) intron_pos 302:1 (6/9) intron_pos 367:2 (7/9) intron_pos 743:0 (8/9) intron_pos 913:0 (9/9) BEGIN 1 MKQERAELEI NPHLCPQSLN RELFNSELQI TQPVSCLRGK CIVEYVKDVR HARTVADFSL 61 DNDTFFFCLH YNQDSTKLAS THYAIRVGTS FQATLPPMAE CSVGDDSDRD ELLYRPNSIE 121 SGEEEDYIKL ARCYRTYTLS GNHMLDSQKN ARVSDLLMDE AIIQLHRSGY KIDDALSELN 181 ANDIILTTDV DNMTQDDAKK FAKGIKQLGK NFSRIHRELL PHHSREQLVS YYYLWKKTPE 241 ATKPKQAARR VNPTSIKRPT KEKVKASRPT STEYLDFDSA SESDVENNGP SGRACHHCYG 301 AESKDWHHAN GLLLCTDCRL HYKKYGQLRQ IANRPSQVPA CLFKRSNSDE EESGVRTRAG 361 KKEQRRRTPS SMSETPDRRS PSTVSNGAPN LTAEETPTKK LNGSVKRAPK RPLHNGVINN 421 VEKSNSSEEP ASPTTPPPTL TNGLTNGHGP ESSTPNGETI SKRMKVEPSY DDDDDEEEGK 481 MTIDEGDDDP MPVLNGFKKE ESVEEIKLEL NGTIKKENGV ETDPTTPTCS MEAENEVCET 541 PAVVSVEIRD ETNGETNSDL KDDENVEPDS PEDTFELGSN VEFETKNAMF VRSIVRSCGP 601 RCARTDLIFK IKVGGVWEKS IKEKEERKKV HLQNQRIQDS EKVAIQQNQI KKEQQQSQPT 661 PQQIHQQQAQ QNAQHLQQLQ QAVMLGHLPP EVLRQMMPPQ FGVDPTAILM QQMMAGQQSQ 721 GVNAAFQHQM ALQQQLEAHQ VQFQLMMAHQ HQQKMIAEQQ QQQRHAAAQQ LREREQREQR 781 ERERERQHQQ QAQQALHQQQ QQHAAAAANQ LNPAMMQMMA LMANSAASQQ DIARLMEMAA 841 QQQQQQQQAA QAQAQRDQER ERREREARER EAAREREREQ AAREAAARDQ AAREHAQAVQ 901 AAAAAAQQAQ ALTPDMQHMH LLQQLMLNPA LMMQLQQAQA QQQQQQPQVT NPLQMLQHGM 961 AAQSANQAEM MRRIHPEPAM RPQHQ //