LOCUS CCD62841.2 927 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans SSD domain-containing protein protein.
ACCESSION BX284602-153
PROTEIN_ID CCD62841.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ptr-3"
/locus_tag="CELE_C41D7.2"
/standard_name="C41D7.2"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004218"
/db_xref="EnsemblGenomes-Tr:C41D7.2"
/db_xref="GOA:O16530"
/db_xref="InterPro:IPR000731"
/db_xref="InterPro:IPR003392"
/db_xref="UniProtKB/TrEMBL:O16530"
/db_xref="WormBase:WBGene00004218"
intron_pos 32:2 (1/11)
intron_pos 78:0 (2/11)
intron_pos 154:0 (3/11)
intron_pos 217:0 (4/11)
intron_pos 259:2 (5/11)
intron_pos 321:0 (6/11)
intron_pos 387:2 (7/11)
intron_pos 451:0 (8/11)
intron_pos 558:0 (9/11)
intron_pos 682:0 (10/11)
intron_pos 875:0 (11/11)
BEGIN
1 MKSVKKTHDV SDNTWFVRII HWFFQKCSAV ICYCPWTCII LTIMLTLVLS LKIPFTRMQN
61 DISDFTPFGA RSRVELEKYR KFFNNHGEPK AIYAFITSKV GDNMLGISQL NDTVHVLDTI
121 SRDFYLKTSQ GPKNFEEYCS GFCLLNEPVK HFYSGMLISG QHGTDFSHLD LGYPITTVLG
181 TKLYMDPNFF GVKVTTSNNK VESIADGNTK LFGDHTKQEP NNIREVSLVV LQFRSELGDE
241 VTPEDLRNYE HQILDYIHDE YQSEHINVYI LTDSYITEEI VRAGLTLLPF LVIGFTIMAV
301 FSSITFVVSA YYTKQLNFYK PILAVMACVC PFMACGASLG AMFFIGFRFG SILCVTPFLV
361 LAIGVDDSYL MANAWQRITC HRRKHARFES VNVELKNRIT EMFIETGPSI TITTITNALA
421 FGIGATTPAA EIQLFSIGNA LAVITDFVFT ITFYGALMAV VGRYEIEQEL KTQKPLPESE
481 SPSETSSTGS MRSSELDDCK FRRMIANVCK FLTNTWVCSV VLGLLAVYWY ICIVGTVNIK
541 SELSPNKLFL AESNIVEIFK QRKSHIIPYY SACWVLVENP GDINNPNQRA KLEELIESFE
601 ALPSANGRYS TKFWLRDYED FLKQSEEIDL PMEEEEDEEL AIQFTVNGSQ VVTPSQPFGQ
661 GNELRQFLEW PEFSFWKGFI QVNESTYQMS KFLVTTAYHG SDLVDWSNRA KLLNEWRSVA
721 DQDKFKSLNV TVYEEDAKFL DLIETMSPVA IQSALWTFAS MFLVAALFIS HPPTLFVATF
781 SILSTSLGVF GIMSWWGADL DPIMMSATVM SIGFSVDIPS HVSYHFYQTA KDTSDIRRRL
841 QMTIEAVGFP IFEASLSTSL CVMSLFFVDL NMAQIFAKCM LLVVVIGMVH GMLVMPVIFA
901 LLDTVPRKLK PRKQHLASTV TVVTVVP
//