LOCUS CCD62807.1 1147 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Apple domain-containing protein protein.
ACCESSION BX284606-1983
PROTEIN_ID CCD62807.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="H03E18.1"
/locus_tag="CELE_H03E18.1"
/standard_name="H03E18.1"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00019148"
/db_xref="EnsemblGenomes-Tr:H03E18.1"
/db_xref="InterPro:IPR003609"
/db_xref="UniProtKB/TrEMBL:Q94248"
/db_xref="WormBase:WBGene00019148"
intron_pos 21:1 (1/13)
intron_pos 46:2 (2/13)
intron_pos 133:0 (3/13)
intron_pos 237:1 (4/13)
intron_pos 302:2 (5/13)
intron_pos 324:1 (6/13)
intron_pos 444:1 (7/13)
intron_pos 481:2 (8/13)
intron_pos 600:0 (9/13)
intron_pos 635:2 (10/13)
intron_pos 851:1 (11/13)
intron_pos 1019:2 (12/13)
intron_pos 1108:1 (13/13)
BEGIN
1 MTSTITTGIL CLVSVLQHVY GDCSPEFFAR SIRYDQAIEI DFYYTGINLA SVKECAAFCA
61 GREFCRSAVY NSRTKTCGIS YEYTVACASR TQRFKEYQVE DGQGTDLVQI ACVDDCRNRE
121 GKDTNKKGKK VPVGIITGEP NDGKTKETLT SSSSLSGNNV ITDPLTTPSV SKLSSTSASS
181 STPESDRPRA NGYVTRLILA NISGLQEGRT GSVEPLTLQQ NDASVAKGGK TGDGNKGKGP
241 VCYRTIRHRY LLGADFEEHD VDSVNDCRCL CAATYLPNNK KNKCMSFQFR NKTCTLNKGN
301 HLGQYDLIEQ RKTLYQYVGC DPEILLETAS SKCPNFKPKS AEKKKPDTKK ETPTKKPKVE
361 LVTAKTVEGE KKETKKPKST TKKPTKTAAA STKRPPTTEK PTATTEEVKS TTAAAKPSER
421 PTGHDETPVE ENSLETKSSE MIIKRDGCFE VIDDHLMVSV AGGLEHDMSI EECQCMCANS
481 KTSRRYEFQC RSATYYHAER DCILNLEDRN IKSKLFEKQF TDVNVTYIGL ACEVDETVKS
541 LGSLALTECR RKVEATTGEP TKETSTKKNG LKSDDCYVEL NDFVLEGTAI AVETAVTPEE
601 CKCKCAEGHK LYGEECASFL YYYDSKTCLI NKQNRFSNPE KFNFVPSINQ SRSYFEWTCA
661 NKDEARHKYR ADVCKVEPEK VDGNLLNNES EPVVVKQDVK ITEEPVPMKR LDEKAFLDKI
721 DQVVESQEET EKKKKVTTKN SEHILDTDEV LKKIEKVEAT STTETEKPTT ETTPATTTVT
781 TTTEETTTPK KQEVKMKHMD EKALMEKINE ASEKLEKSQE VTEEVTEATT EAITTTEEST
841 TTAKLILNKK KNPTKDSGSV SSASGNGKTV AMKKTDQKTI ETLLKAKIPE SSNVDSQEKE
901 DINKDPRLVE MKKVEAQVLE KLAKMEITES TAPDSTSSTI PENIETESTS SEITKQTAKT
961 SMKSSIPEAE GLEDDEVETD IGQELSTGLN DAPASVPAPE STISITSTTE KVTTTTTTQA
1021 KASGVKSHKF DEKIDKSGMP LPRITTTTEP STTTAGYPPA GRCSYSALYQ TSFLGRRLLK
1081 AVRVKTPADC FAACYALRCR SANLIAQGEF NSCELYRDSL IDYRRPDMIG YDASTVYFDG
1141 INCDGTP
//