LOCUS CCD62787.1 730 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Choline transporter-like protein 1 protein. ACCESSION BX284606-1205 PROTEIN_ID CCD62787.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="chtl-1" /locus_tag="CELE_F35C8.7" /standard_name="F35C8.7b" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00018037" intron_pos 10:1 (1/11) intron_pos 27:1 (2/11) intron_pos 46:2 (3/11) intron_pos 102:2 (4/11) intron_pos 197:1 (5/11) intron_pos 248:2 (6/11) intron_pos 387:2 (7/11) intron_pos 589:0 (8/11) intron_pos 637:1 (9/11) intron_pos 671:1 (10/11) intron_pos 695:1 (11/11) BEGIN 1 MKQYNYSYEA APQFCRNSAM AIQTAPGTAE SKRDNNPMSD FNLQRRGCTD VFCCFLFFVF 61 LCGWVVVAGF GIMWGDPQRL IYPTDSEFRR CGVNLEGSYN FSKRPYLFYF DLTKCISYAT 121 ALGGCQTTQL CVKECPSTYF SYLQLRTASV SEIQNKMKSV VYCTDDVDKT TVTTFQALQN 181 LVQRGKCVSY TVKSVPVLQR CFPEAIFNAV DNVNNVLNSS NSLDYLKRTF GDDALIPQDI 241 QITGQSSEVM KSVVEDQPVT HKVIHDLSQT WWQTLILIFA AGILSFIWTV IMRLLGSLII 301 WLSILIVLVA LGFGAGFSWL KWNTLKTTGA IDDYSFHPAF DAYFEMPTTW LVVAIATSVL 361 LLIFLLVILF IRQRISIACA LISESSKAIG SMMSTLLFPL FPFLLHIGVF ALWGSIAIWL 421 ASSGQEVCRL KETNGQVYNT STKCDCTAKV TGCTYVGIEK ESETIFWLQV YNLFAFFWLS 481 CFVTALGDIA LAGAFASYYW ARDKRHDVPT FPVIRALNRA IRYNLGSIAF GSLIIAIVKI 541 IRVLLEYIDH KLGKSQNKAV KWFLMCLKCC FWCLEVFFKF LTKNAYIMIA IYGKNFFSSA 601 KDSFLLITRN IVRTVVVHKV AGILLFLGKS MITLGMGILS FYYFSGRWVV EGVPKVDLYY 661 YFVPIVIVVI GSYFMADLFF DVYEMAVDTT FICFLEDSEQ NDGSLERPFF MSEKLLEILG 721 NKNDIPLHSK //