LOCUS CCD62786.1 771 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Choline transporter-like protein 1 protein. ACCESSION BX284606-1206 PROTEIN_ID CCD62786.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="chtl-1" /locus_tag="CELE_F35C8.7" /standard_name="F35C8.7a" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00018037" intron_pos 87:2 (1/9) intron_pos 143:2 (2/9) intron_pos 238:1 (3/9) intron_pos 289:2 (4/9) intron_pos 428:2 (5/9) intron_pos 630:0 (6/9) intron_pos 678:1 (7/9) intron_pos 712:1 (8/9) intron_pos 736:1 (9/9) BEGIN 1 MGRKKHRTIP AVEVYEKSDG FPMPTAPPMS PSRMDGVYPS HHVPPLHQAY HVQPASANHV 61 PDQIARFNVI KPDRLAKRHN PQLYTKRGCT DVFCCFLFFV FLCGWVVVAG FGIMWGDPQR 121 LIYPTDSEFR RCGVNLEGSY NFSKRPYLFY FDLTKCISYA TALGGCQTTQ LCVKECPSTY 181 FSYLQLRTAS VSEIQNKMKS VVYCTDDVDK TTVTTFQALQ NLVQRGKCVS YTVKSVPVLQ 241 RCFPEAIFNA VDNVNNVLNS SNSLDYLKRT FGDDALIPQD IQITGQSSEV MKSVVEDQPV 301 THKVIHDLSQ TWWQTLILIF AAGILSFIWT VIMRLLGSLI IWLSILIVLV ALGFGAGFSW 361 LKWNTLKTTG AIDDYSFHPA FDAYFEMPTT WLVVAIATSV LLLIFLLVIL FIRQRISIAC 421 ALISESSKAI GSMMSTLLFP LFPFLLHIGV FALWGSIAIW LASSGQEVCR LKETNGQVYN 481 TSTKCDCTAK VTGCTYVGIE KESETIFWLQ VYNLFAFFWL SCFVTALGDI ALAGAFASYY 541 WARDKRHDVP TFPVIRALNR AIRYNLGSIA FGSLIIAIVK IIRVLLEYID HKLGKSQNKA 601 VKWFLMCLKC CFWCLEVFFK FLTKNAYIMI AIYGKNFFSS AKDSFLLITR NIVRTVVVHK 661 VAGILLFLGK SMITLGMGIL SFYYFSGRWV VEGVPKVDLY YYFVPIVIVV IGSYFMADLF 721 FDVYEMAVDT TFICFLEDSE QNDGSLERPF FMSEKLLEIL GNKNDIPLHS K //