LOCUS       CCD62780.2               778 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Coiled-coil domain-containing protein
            protein.
ACCESSION   BX284606-1218
PROTEIN_ID  CCD62780.2
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="C41A3.2"
                     /locus_tag="CELE_C41A3.2"
                     /standard_name="C41A3.2a"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00016559"
                     /db_xref="EnsemblGenomes-Tr:C41A3.2a"
                     /db_xref="UniProtKB/TrEMBL:Q3HKB7"
                     /db_xref="WormBase:WBGene00016559"
     intron_pos      43:1 (1/14)
     intron_pos      73:0 (2/14)
     intron_pos      116:2 (3/14)
     intron_pos      144:1 (4/14)
     intron_pos      175:2 (5/14)
     intron_pos      263:1 (6/14)
     intron_pos      294:2 (7/14)
     intron_pos      355:2 (8/14)
     intron_pos      432:2 (9/14)
     intron_pos      521:1 (10/14)
     intron_pos      545:1 (11/14)
     intron_pos      627:1 (12/14)
     intron_pos      653:1 (13/14)
     intron_pos      672:0 (14/14)
BEGIN
        1 MTNDDDEKWN VAIKVLVEHD KYREYRLPRS LSTDRNLLWH AKHEVGKRIA DIIKKKKLKI
       61 YKLKHAIKHI EKSQTHWLTL AKSVNRNNEN FFLNVLLASE NNIEKFEHHN FFSNQSWTKH
      121 RDVSRLTAEE IDDLNLRAGD SEQKESCDEK NSHYDWVCKQ INGMAKGHGP SRIRRNTPSS
      181 SDCTRIGFTE TFMQNGSSQT KIVASEKSAS VINEKVNHNC NICVVYAPVA ATTHVCTMTK
      241 NVLPTTSSQK SLELRNNSTV QNENVNYRKT ILENGKCQNE SRKSRNSEVL VNNTLNCTSL
      301 FIEKHPVGIS KKHGNVWEQR AAERAEKLLA DKRTNQQQDC LASSSTAPTD HIVLISSKLE
      361 SPQETPTGYS NKKSDNSRIA LVAGNRDLPE EVIFTKEESH SSLDSYSNHC NESQDDEPIK
      421 MGNFNGSIAG NEKELSKTEQ RAKRRQRVRE KARLCAEQAK EEEKKVKEQK RIEHDLRIMS
      481 MKKEREVKHQ LDFEKRKRDI DNIRRERDAQ KRARRGYGPD PTRIKEMLKS RDRLSEHIRE
      541 KDIAYRVIGS KLFLDKRISE LAEETSMEIN TSKYKMLEKY RVRITAVEKM NIFLVFVSYT
      601 LIEIGNTIKL DELMEYLAWK SINIDKDPES PINIVIEKAF ELFCQERKPK IADCMIKALQ
      661 FSESILNRIS NITEKTDSVE RAKLILKNYR ILYDEAVDFM GITSYLRTRL NTEFFVMEED
      721 YLLTVTQTEN SGYRGEKRNT NESDEEEEYD KPEVQDMSCQ TDGEPYDVKA ASLLPRLQ
//