LOCUS CCD62755.2 916 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans EB domain-containing protein protein. ACCESSION BX284606-1445 PROTEIN_ID CCD62755.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="chtb-3" /locus_tag="CELE_T10E10.4" /standard_name="T10E10.4a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00020421" /db_xref="EnsemblGenomes-Tr:T10E10.4" /db_xref="GOA:Q22378" /db_xref="InterPro:IPR006150" /db_xref="InterPro:IPR036508" /db_xref="UniProtKB/TrEMBL:Q22378" /db_xref="WormBase:WBGene00020421" intron_pos 22:1 (1/14) intron_pos 98:2 (2/14) intron_pos 118:1 (3/14) intron_pos 215:0 (4/14) intron_pos 236:1 (5/14) intron_pos 255:1 (6/14) intron_pos 280:1 (7/14) intron_pos 363:0 (8/14) intron_pos 581:0 (9/14) intron_pos 617:1 (10/14) intron_pos 654:1 (11/14) intron_pos 790:1 (12/14) intron_pos 826:2 (13/14) intron_pos 875:1 (14/14) BEGIN 1 MELYISMLPF LTILLLPHPS QGIENSPSAG KVCMTVEHLR PADNSTQFYE CAPLNEDEVK 61 GYALSKKYLG VWNLRDCPKE HEFDEPKQRC IEKKTFRRQQ VACAQNVQAS GCVSACQAPT 121 AVANQGMECN WRSSPLQQDP ASNAYFFQCV PSSPTEGCGE WTRMQCSQST VFNSDLNVCV 181 PLAIQNSCDS STQQPVCSCS QVSSSCPGTS QCQNKVCCQQ TDTLNLNNLI QHQAPLCPGS 241 NVPPLGSCNE QCPQYSACTP GLGCCPVPVN EQPTGMIKIT LCPGSYSPPF GVCGSCPSGT 301 QCNQQLQMCC PLQQQPSTDI VYNVVLLCPD GTPSTTSCSK GCGPNNACFQ GACCPIRCPV 361 GQNAVGFCSS GSCGVGSCYS KTTCCQEPIK LPVCSNGMIS QKRCLVAAEC GLNLECSNGG 421 CCPIPFCPNG VTARGRCSQV NGCPMGQACM EGLCCPLPKC SNGITSLGIC TRTLDCGRIG 481 VDCNNGACCP LPTCPNNIAS SQRCSGGCTN CCPVGQTCMN GGCCDLPSCP SGGFAISMCT 541 GKCGTGFECV NSGCCSLPRC PSGLMSVQRC AMGIGCPPGN QCENGVCCPM PMCSSGSIAS 601 SVCGMANSCP IGYICEGRGC CLEPLPLCPN GGRASMRCYR GAECPPGYGC TPLGGCCLLS 661 MEPVCPTRSN AVCQCSPNNV CPSGASCTMG TCCSSGISPI VSFSVPGTSC QNSNQCNGFQ 721 STCAQCVQEV CSCVNGAASN GATCEQMAPT VLTLARNGCD QYGSPCKFLL STARRRPLFA 781 PIGNMTETPL FFNVASKRKC VANIQNFDAD STCLPNEKCI DGECRMKLWP GEYGCQTDIE 841 CQSRCPNTYC EKKKSDKNVP QCQCTNGMLL YGRCFSQCPR GFHESGAFCM HDDEDKFWMD 901 AESQDNLKAL LNAGKC //