LOCUS CCD62713.1 1610 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans AT hook Transcription Factor family protein.
ACCESSION BX284606-166
PROTEIN_ID CCD62713.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="attf-5"
/locus_tag="CELE_T04G9.1"
/standard_name="T04G9.1a"
/note="Product from WormBase gene class attf"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00020214"
/db_xref="EnsemblGenomes-Tr:T04G9.1"
/db_xref="UniProtKB/TrEMBL:Q22173"
/db_xref="WormBase:WBGene00020214"
intron_pos 2:1 (1/12)
intron_pos 41:1 (2/12)
intron_pos 232:0 (3/12)
intron_pos 263:0 (4/12)
intron_pos 300:0 (5/12)
intron_pos 413:1 (6/12)
intron_pos 476:0 (7/12)
intron_pos 553:2 (8/12)
intron_pos 588:1 (9/12)
intron_pos 643:0 (10/12)
intron_pos 783:0 (11/12)
intron_pos 1589:1 (12/12)
BEGIN
1 MNADDEILRR EFGQPGRSMA SVFPYGGQPV HGVSLAHHFT SRILEPPVPL NGCIRATPIL
61 NQRFGPHYNR RFTQPNGAPY PLRPHSDTRN AHRVYPIPVE PPQRVHSIPP VYHRQKRSYA
121 SSVQQQKPPP VPIKQQVPVP SVPVIESIEQ IPLPRPQREP LIPESNPAAW QDVHSKREEK
181 ITNQLMAKSM ELDEFKKKFP DGTSIKEILT SGWYKDKLTG RLIQGKDPNM NETPSEQPSD
241 KQVTETDLDR AMRLVNCRSH WKNSRGHQPI RPAQPNIHPM SQNYSGPRNA HQHNLLPVKI
301 QQIQSHFVQN NLPSPARGAQ VSNALPSTSS SESSKLTDDI KQEQAMISKS SLEHPRQQST
361 REFLMQNQMG QKARSLWNQK TSGHFSEEPT PRHPVTRVSK YAMAEFTRHT PTGTRSATPN
421 ILRKNRNTDG CPSPMGLIDH ALFGSSMPPT VQSLNKLTGA RSTPDTPKQL KPEEPASETP
481 RKRQRKQILV SDHHYQSSHL YSLLQDDPVK HEPPSEKEEE QSRSSSNIVH SASQENTKFD
541 EDIVKVEAPE HNHTPPPVKK TRGRPRKDRS QEPTAVPKHM QRMRKPKTLV HDGALIPVAE
601 TKLNPENDEK AEEERKALLQ ALPTNLLNAI QAQKAMDREQ DKQPRKYTRR TRTPKKLATE
661 NQPLNAVTAS LQFLQSITNI DPNVLFSGLN SEILNDEAVE TVGEEKLDES STLLPTATVV
721 ATSGNPLTLD FDNPSKIVVA PIWTDDTGPL MPISMYRTDK KIERKLMLDP VPKPVELMSN
781 GTHPALSISS SSLPNQSPDS ISIPTKMFSF VNAEDLLVPS APCQFETTSI PMIPVHKETK
841 PLETRTCDSI KRVRFSLDCS SKNSISTKER NLLTLKLMRK YQLKFAKFNN VLFGKPKPRQ
901 REGSISKTKD MHTIRKINEH FDSLVINCVT AHFDEQPDAI TSHQHNSIVT EFPIDWESTD
961 TGCRWFPWHE RIVNNCAKDA ASDMVDSKIN EINSVIAYVD PMINGVTDLD VKEELSDLAF
1021 LIRTMYDNLD SKLQNHVRYG QVSLPKTFEL KLKSIEQRLG QWTSVKEKFR SKNVDASISK
1081 WKVAMNNYIA ATMDREMKKQ CLMDSYLKLK KSIQCFDAIV DITMFASRLQ VLYYHACRVY
1141 RSPLNLLEVQ NIMRSVEDTE YLLLLAEVKV KLFEEIDVNP RVREQLRPKI DLIDLYMAAD
1201 SMNVAKGRLR RLLRLNTDDG SIKACENDLC WKVDKFKDKC KDCDIPEIIS LLPSKSWPQV
1261 IIEEESARAT GEYPERTNLF LETEDFDFDY SLELPVRLFA NSTLGGTLSQ MCISLPQLTS
1321 IVDEKLRERA EKEKEEPKNI IQSVIPLYRQ HSKFYEKRCQ ILIEARKQAN MRKAEHSTHF
1381 NSNDQKLVNS IQRDVKMYGS VVSGDQLLDY KPGRDDEKQL DVEIQNKIRL FREQKRAEAL
1441 ERDRLTNLNR LGRQTETTEI KRKKAPCEKT ESTFENGEID YDNIHHGIRI IESESEESSD
1501 SDSDSDENVE QEIIDGQVIS MSQKDCQKLL EQHRIACDRI REPNNFLRDQ NIMRNSERIR
1561 QSDWEYEYML DQLEYLENFE DDEIDVEEDK KFKHNVSSVD EEPVEKRRKS
//