LOCUS CCD62711.1 1408 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans MAP kinase-activating death domain
protein protein.
ACCESSION BX284606-157
PROTEIN_ID CCD62711.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="aex-3"
/locus_tag="CELE_C02H7.3"
/standard_name="C02H7.3b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Tr:C02H7.3a"
/db_xref="WormBase:WBGene00000086"
intron_pos 77:1 (1/19)
intron_pos 136:2 (2/19)
intron_pos 183:2 (3/19)
intron_pos 233:0 (4/19)
intron_pos 284:0 (5/19)
intron_pos 387:0 (6/19)
intron_pos 428:0 (7/19)
intron_pos 528:0 (8/19)
intron_pos 577:1 (9/19)
intron_pos 700:0 (10/19)
intron_pos 782:2 (11/19)
intron_pos 844:0 (12/19)
intron_pos 909:0 (13/19)
intron_pos 1080:1 (14/19)
intron_pos 1120:2 (15/19)
intron_pos 1229:0 (16/19)
intron_pos 1330:0 (17/19)
intron_pos 1368:1 (18/19)
intron_pos 1384:0 (19/19)
BEGIN
1 MNDKEKEICP RLIDFLVVVG KRNRTRGASQ SSPDATTDTT VTYPEILRRY PTDDHKDFIL
61 PTDVTVFCQP EGCTTTSARL RKNARNDPQF FVFMLTEKDS AKVRYGICLN FYQSFDRRST
121 PKDEIKKVPD DAHHKKRDSH VSLTSLCFIS HHPFVSIFHQ VLLLLKRIID SSNHRAAQRT
181 GLKDVVWAIL TGHYNEPIVP EVMKEIKEIE TWILMLLSSP VPVPGKTKVQ IEVMPMDLSQ
241 VFEFALPDHT RFTLIDFPLH IPFEILGIDM ALRVLTAAML EFKIVIQSRN YNAVSMCILS
301 IVALLYPLEY MFPVIPLLPA YMPSAEQLLL APTPFLIGVP SSFFHHRKIR ELPSDVILVD
361 LDTNCLQVPD DLYIPDLPEP DATHLKERLK NAINKMTTMT VDNETSVTDA DFGIDIDSVD
421 VACRVAMVQF FNSANVFGNF SEHTRTLRLY PRPVVSLQTD SFLRSRPQCT QLITDLCRTQ
481 AVEYFAECCL CPKNETFVRV QAGIESAEQV GDKPKWFSES LMPVHFMVYP NNSTLDSAIR
541 VYNAEIDNDD YEDDSATSTE NSNSIDDLVF DENQVTDAGG EVTKPLAEVN YIYKEPMTLE
601 LPQSESVVSI DSSLSSGRSS PDSSLSTSAV DSEADFARLA DNLALKSNSQ GAFSFDHGSD
661 SEYESTPVSQ RRKTIHNPGS DASDTPTSRG SIKSGLRMKG LTTLTDSGEK VLGPSLMNAI
721 NGYAEKSQSV FSQVINKTAP KAQALKERTM KPLANRIEQS QHIVRSKTQP NPTSQQTANQ
781 QSKNQQTVKE FCDQALVGQS VGMFSAPKLK RLMEDESLRE LVCSKLNLGL EVKLSEDEYV
841 KEVQLTKGQF KAYVKILKAC LEGIEVSFNT PGCCGFASVF HVLEIAHTHY WAMGGGEVIT
901 PSSSAPSTMT TPSEHSNDIL KESRPKLPAS TIDLRTPTKP LGQNVTPTST NNHEIAQSTR
961 SPALPPPVPP REAPPIPKRN PPPLGAPPKV PEGARAPPPL PPRPKVKTTA VDETPQNLVP
1021 NNQPAQPSSP SFLADADEQT KPLLKPAPPT TLPVGKQEPC KVLPTPNEPV RHYIYQELIL
1081 AVQHQIWQNL QFWENAFVDL VAQEREIVGM DQEPSEMIDR YSALNDSEKK RLELEEDRLL
1141 STLLHNMTAY MIMCGTGQKA LQQKVRRLLG KAHIGLVCSK EINKLLDELP STQGNFIPLK
1201 PLGSRLVQKQ SFTVCPGQSS DGQMMFMEVC DDAVVLRSIT GAATERWWYE RLVNITYSPK
1261 TKILCLWRRH DDKVHMHKFH TKKCRELYQC MKAAMERAAA RGKVNVEGRA LGGEFPVHDT
1321 ETNQGGLLQV RCDGVAVIFA HNQIFIGLSN IKKCNTFGGN VFLLEEFDRK KGEIIQRRYF
1381 SQMAVDIAWA MHRVFSVQFA ISCQKDTN
//