LOCUS CCD62041.1 482 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans C2H2-type domain-containing protein protein.
ACCESSION BX284602-2738
PROTEIN_ID CCD62041.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lir-2"
/locus_tag="CELE_F18A1.4"
/standard_name="F18A1.4b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00003045"
/db_xref="EnsemblGenomes-Tr:F18A1.4b"
/db_xref="UniProtKB/TrEMBL:G5EGH3"
/db_xref="WormBase:WBGene00003045"
intron_pos 24:2 (1/6)
intron_pos 95:2 (2/6)
intron_pos 232:0 (3/6)
intron_pos 255:1 (4/6)
intron_pos 315:2 (5/6)
intron_pos 455:2 (6/6)
BEGIN
1 MERVKSHFHN RKKVLLARIK DELKTIPSSN QMSTDEKMEE LVRRRICIGE YDEQLARVCL
61 DIEDEEKGRT EQFGNEQIQQ PMTNLFTETS HQSLLSQLLT SSASQSKSEI PISMSSPMES
121 ASSKDSEPQA VISLPTLGAT RAPLLSKLLS DPSTSKENGF LLRKEPVRLA RAPSAIRNPN
181 VSNYDRKRRA ASPYEKSNRL SVLPSPQNQY LSHLIVDVSS PQELKRLLSV LIDHGFSRFQ
241 HIGSSDMVAS SIRTGIPRAP RLDTVEYSNY EHEPETDEIS RDGTPFWSTP IPPTNKELPV
301 SPVSQLDMTN SIKSRVERVD VEVKLEPCND EDDEFSEEVD EQTAELEEQL ATEAIRTGLA
361 LFGKVSPSPK RMKSCGSSGS VCGDVVTAIC EICGIGIRLN SGGSKWNFFE HVMMKHSTHK
421 PFKCSQCPYQ AVRKVRVKQH GQSQHNSEHE PVNMITPEVR KEWLDTMAKC FPNHQYGKEA
481 KI
//