LOCUS CCD61779.1 1275 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans VWFA domain-containing protein protein.
ACCESSION BX284606-340
PROTEIN_ID CCD61779.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="H02F09.3"
/locus_tag="CELE_H02F09.3"
/standard_name="H02F09.3"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00019146"
/db_xref="EnsemblGenomes-Tr:H02F09.3"
/db_xref="GOA:O76602"
/db_xref="UniProtKB/TrEMBL:O76602"
/db_xref="WormBase:WBGene00019146"
intron_pos 42:1 (1/6)
intron_pos 79:0 (2/6)
intron_pos 107:0 (3/6)
intron_pos 135:2 (4/6)
intron_pos 161:2 (5/6)
intron_pos 224:1 (6/6)
BEGIN
1 MKLKFKMPRG IYLVFILAVS AALVAGLILT IVLVSRPNKA APFDGRVITV SLCNSNSEPQ
61 ISSLRFKRDA NTDCSFNANK NQLRNFLTSS AEDANFILTT YSGTSTKTEP LTKQLALDQL
121 EAIKADGSSA VKQSSAIESY DPSAYSNTDL VFFTPCQTNY DGIEDDIKNV QTAINKVITK
181 TFVIVSLSLN STDMNSRYGE AAHNIPTTPT EDISNKINNI LNIGTTQTPP VTTSTMATTT
241 ANVTSAAPNT TVTISTSPTT VVTVPSTAQT SSTTTVTVPT TTVTGPTTVV TVPTTVVTIP
301 STVVTSPITT PSTVVTVPST VVTVPSTAVT KPSTVVTAPS TVVTVPSTVV TKPNTVVTSS
361 PTVATTPTTV VTTPSTVVTV PSTVVTVPTT VVTNPSTVVT APSTVVTVPT TVMTSRSTVI
421 TTPTTGGSSP STAGTSLAST AVTTETSIGS SSTPLPSQST SLSMSSLSTY TPSSSTAGAT
481 SPATQQSTKP TIGTSMSSGP TTVAPGASTE STVLQSSTPS GTTVTLPSGS STATAGTSPQ
541 ASTVTTVTDI STVSGSTVTS QTAESSLSTE SPTSAGSSIS TVSTVSSQPS TYIPVSSASS
601 IYSTLSGSTG STASPGTTES SGSSTSGPST ISGSSASTVT GSTVTEASTI SGSTESSTIP
661 GSTESTVSEA STVSGSSVST VSGSTESTSA GASTVSGSTG STVSDSSTIS DSTGSTNAPG
721 STESTVTGSS VSTVSGSTGS TGPSTMSAST GSTNTPGSTE STITDGSTVS GSTGSTGSTN
781 NPGSTDSSTT GISTVSGSSL STISGSTGST VSGSSDMTVS TGSTSSPGST ESTVSGASTM
841 SPSTGSSVET STSGSSVSTV SQSTSSSTTG QSTVSESSVS TVSSESTISQ STGSTTTGES
901 TVFGSTGSTA TGSSTMSAST GSTDTPGSTE STITGSTVTG ESTVSGSTGS TITEGSTISE
961 STMTTVGVST GSTITGESTV SGSTRSTVTG ESTVSGSTES TVSGSTESTP TVPSTVSGST
1021 GSTVTGESTV SGSTASTSSG STGSSTEAGS TVSGSSASTV TSSTGSSTSG ESTVSGSTVS
1081 TVSGSTGSTI TGESTVSGST ESTVTAESTV SGSSVSTVSG NTGSTITGES TVSGSTGSTG
1141 ESTILESSVS TVSVSTGSTI TDGSTASRSS VSTVSASTES TVSGGSSASI GSTNTPDSTE
1201 STISGSTISG STGSTESSTM SAGTGSTETS TSGGSTVSGS SLSTSSTESS GSSSTQPPST
1261 STELTGANNK FGHSI
//