LOCUS CCD61746.1 1163 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Calmodulin-binding transcription
activator homolog 1 protein.
ACCESSION BX284602-1590
PROTEIN_ID CCD61746.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="camt-1"
/locus_tag="CELE_T05C1.4"
/standard_name="T05C1.4b"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00020251"
/db_xref="EnsemblGenomes-Tr:T05C1.4b"
/db_xref="GOA:H2KY85"
/db_xref="InterPro:IPR000048"
/db_xref="InterPro:IPR005559"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR014756"
/db_xref="InterPro:IPR020683"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR036770"
/db_xref="UniProtKB/TrEMBL:H2KY85"
/db_xref="WormBase:WBGene00020251"
intron_pos 54:0 (1/16)
intron_pos 88:0 (2/16)
intron_pos 116:2 (3/16)
intron_pos 183:0 (4/16)
intron_pos 231:1 (5/16)
intron_pos 307:1 (6/16)
intron_pos 488:0 (7/16)
intron_pos 534:0 (8/16)
intron_pos 670:1 (9/16)
intron_pos 869:2 (10/16)
intron_pos 896:0 (11/16)
intron_pos 921:2 (12/16)
intron_pos 949:1 (13/16)
intron_pos 1021:0 (14/16)
intron_pos 1095:2 (15/16)
intron_pos 1130:0 (16/16)
BEGIN
1 MNNSVTRLLF KRLLTLQLCH HFDIIPHRDQ SFDCVQMQQP QNETANNFIP SIQLLWSTDP
61 PQIRPDGTYP QAVELFPCFK DKWNTKEEIL NIILAANADP KSNCVTVQSS PRPCSSSQFI
121 YPRLDNAWYK NDGYIWKKRT NGKQNREDHL NLKISGHPHI SAKYIHSAIV PTFHRRSYSV
181 PDSDCHVLVH YLNVKTNNKI DDQAEEIARS MIENKVFISL SQLHDQLSPI FLQTLNVNQL
241 VAEINEHLKK KGVNLPTSPL PQEPSSSTSR ELERRNSCSS AFRKGLSSVA LRRQPSANSE
301 IDANHIGTML KRFGCNGSSS DRISIIQPTM QNFQSIRSHQ NHVAMESRSP SGDGDSRPIT
361 FEEDASYQQL SIKSSTNVST PASAFAEKMK IRSGSQESPM GPPSSSSVTS TSLIPIIEMT
421 PSSSSLKGGQ KMLVVGGYYR KGHEYKISFG RGRMMPAVLI HAGVLSCVIP PSAKPEVVQI
481 RVFCNGQAIS TASEFTYEPQ SAHLIKENDD TLVQIFEKIR IMACAFNAYS SIENIQSSSC
541 MESLLANIVQ QIDNEVSSQN LNYKTELLNG SAHFPSKTVL HLVASLDYDR LFEALIDLSR
601 KVPACREFDI FARDNDGSTP LHTACKNSAS RIARLIISID SSAIDVVDDR GRTPVEVAPE
661 HSIDMLSDKN NEEERVNATE LWVMTNGKAF TTDKILDGKI SRAPIAEKPD DLLREATSSY
721 SIMSEMYEGP MLQAGTSREC DEDCESCCDP DSTQQLHVEI AMDTDVHVPD SPKMARLFHA
781 VTSPGIVVPP NARARMADLA RQIIEALPDR IKRNSEVSMC PDEEDPGQNH HGGVEPMFYQ
841 QASCSMSTDS PNMMDDYFDM MATETRNDIF TEPRSTETTE TSASKSAQLF ATHCNFFDDR
901 SFASSSTRAN TFESDTLDFD KDLGEFFTIH VDRFVDPIQQ RLANLKYNDD EQRDVYEAAM
961 VIQRAYRVYR ARSTTRRQED IERRAALKIQ GCYRRYKQFC YFKKLHNAAI VVQKHFRMRK
1021 RDDKEEGAVE AVIASVPEHP TLDGQSICIQ VPKTNSTMLR ERAATTIQVA YRYRHRKRQA
1081 AARKIQNFMR QNRNKLRKMH ALNEDGTSPA RKPAEINATN EILMVNGKEM LTTMPQNSFR
1141 SVQHHPQQQF HIDQHNVIIH GTN
//