LOCUS CCD61467.1 951 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans GLutamate Receptor family (AMPA) protein.
ACCESSION BX284602-2798
PROTEIN_ID CCD61467.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="glr-4"
/locus_tag="CELE_C06A8.9"
/standard_name="C06A8.9a"
/note="Product from WormBase gene class glr"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00001615"
/db_xref="EnsemblGenomes-Tr:C06A8.9a"
/db_xref="GOA:Q17697"
/db_xref="InterPro:IPR001320"
/db_xref="InterPro:IPR001828"
/db_xref="InterPro:IPR019594"
/db_xref="InterPro:IPR028082"
/db_xref="UniProtKB/TrEMBL:Q17697"
/db_xref="WormBase:WBGene00001615"
intron_pos 32:1 (1/19)
intron_pos 80:1 (2/19)
intron_pos 114:0 (3/19)
intron_pos 219:0 (4/19)
intron_pos 253:0 (5/19)
intron_pos 287:0 (6/19)
intron_pos 309:0 (7/19)
intron_pos 339:0 (8/19)
intron_pos 375:0 (9/19)
intron_pos 462:0 (10/19)
intron_pos 497:1 (11/19)
intron_pos 560:2 (12/19)
intron_pos 644:1 (13/19)
intron_pos 680:2 (14/19)
intron_pos 738:0 (15/19)
intron_pos 779:1 (16/19)
intron_pos 801:1 (17/19)
intron_pos 840:0 (18/19)
intron_pos 871:2 (19/19)
BEGIN
1 MQEKCRLVRG FSILLVIFYI ANSAADDRFH IGTIANRGSF AYEHLRYAID RWNTEHGAHT
61 QIKFSIVSPI RYDNNYEERM CEIMQQGIVA VVLSNEESEQ DSQLIKSMCH YFNIPCLSLQ
121 STSLRDSVSD FVTLLGPSRG AGARATSEFL DSMRWTGFLL AYQHGSDLED LSPLMQYKQI
181 VDTGGRRIHI KIRRLPNNTD DYEPFLKYVK TRLKQTNIII HSNNITVLYN LLQQARGLNM
241 AEPPFSYVFT NTDLSLLEDF LNNMYGASFH CNITGLQLVK NDPMMKTQLA LTSEAVYVVG
301 MSIYRMRELG HAPRQSSIMC DSHDIWSDGR IMNEGIRKLK LRNQLTGDVQ FKSNGERDDI
361 MYHGVGRINS QFVKLGNWSE KRGWNFDSRY ANRWEFDIDP DSEDLEGLHL RVVVYLEEPF
421 VIKTGENQYE GFCIDLLNEM TQVLKFNYTI IEVQDGTYGI EDESGRWNGI IGALQRHEAD
481 LSLSAVTITY SRAEVVDFTL PFMHLGISIL LARTSEETDK GSLWTFLEPL SLTVWISLLI
541 SYCIVSYSMH ILAKFSPYEW YNLERIDERD FENIKNQKNQ FTVLNSFWFT MGSLMQQGSD
601 VIPRAAATRL IAVVWWMFTQ IIISSYTAQL AAFLTVERMS TPIESTQDLA NQQKIRYGVL
661 KSGSTMDFFR ESKIPMYERM WSVMESSSPG VFVNSSREGI ARVKSGGYAY MMESSMLEYY
721 LERDCELQSI GGLLDSKGYG IALPKGSPLR DILSRTVLQL QERTILEALK NKWWRDRREG
781 PSCGPPPSEK ATNSKPQNIF GIFYVLLTGL IVAFLLACGE YCIESRHEAF RLKLTIVGKF
841 MDWYRGNSND SKQRSKLRNM QLDTAGQEVS ISTRHDPPTP PQPALTSRPD PTRLSISSPA
901 PTICVVSCDD GTPISRDRPP SISRAGLRRL SRMLPAATHE QLSRFRQGSM S
//